Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12381 233 2e-56 seq13135 104 3e-17 >seq12381 Length=8583 Score = 233 bits (258), Expect = 2e-56 Identities = 521/773 (67%), Gaps = 13/773 (2%) Strand=Plus/Plus Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 || || |||| ||||| ||||| ||||| || |||||||| || || | | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 ||||| || || | | | ||| || ||||| || ||||| | | |||| || | Sbjct 6170 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGAC 6229 Query 33534 CTAACGGTTTCTTCACTCGGTGGATGTA--ATAA-ATGTTTAAACATCAAACATGCGAAA 33590 ||| ||||| | || || | | |||| ||||||||||| | ||| |||||| Sbjct 6230 TCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAA 6286 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 || || || || || ||||||||||| |||||||| || ||| | ||||| ||||| Sbjct 6287 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 6346 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 || || || || |||||||| ||||| | || || || ||||| |||| ||||| Sbjct 6347 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCC 6406 Query 33711 ACTGCAGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTT 33766 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 6407 ACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATC 6465 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGAT 33825 | ||||| | ||||| || ||||||| | ||| | |||||| || |||||| Sbjct 6466 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAA 6524 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 ||| |||| ||| ||||| | || ||||| || || | | |||||||| || | Sbjct 6525 AGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGT 6584 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 |||| || || || || ||||| | ||| |||||||| | | |||| | |||||| |||| Sbjct 6585 GAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTT 6644 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || || || ||||| | || || || || || ||||| || ||||| || | Sbjct 6645 CTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGG 6704 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 34065 | || || | ||| |||| ||| | | ||| | ||||| ||| || Sbjct 6705 CTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGAT 6764 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 |||| |||| |||||| |||||||| |||||||| || || | ||||| ||||| | || Sbjct 6765 CTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAAT 6824 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 34178 ||||| || || |||| || ||||||| || || | | ||| |||||| Sbjct 6825 GCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAGCGGTGTGGGTTTGGT 6877 >seq13135 Length=7929 Score = 104 bits (114), Expect = 3e-17 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAG---CCTCCACTGGCACGAATATT 63532 |||||| ||||| ||||| || || | || ||| || | |||| ||||| || Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTG---CGAATGTT 5950 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | || ||| || || ||||| || ||||||| || | ||| ||| ||| | ||| Sbjct 5949 ATGAACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGT 5890 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 || || ||||||||||| ||||| || |||| | | |||||||| || || | || Sbjct 5889 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG 5830 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | || ||| || || ||||| | || || ||||| || |||||||| |||||||| Sbjct 5829 TGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 5770 Query 63713 AAGTAGATTGTACGTCT 63729 | || || ||||||| Sbjct 5769 CATTAAGTTATACGTCT 5753 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 63951 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 64010 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 4591 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 4532 Query 64011 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 || ||| ||| |||||||||||||||||||| | || | | || || | ||||| Sbjct 4531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATGG 4474 Query 64069 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64127 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 4473 CATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAT 4415 Query 64128 TCTACCGTTGTTACTCCA 64145 ||||| || || |||||| Sbjct 4414 TCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629486402542320