Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq12381 223 3e-53 seq13135 96.9 3e-15 >seq12381 Length=8583 Score = 223 bits (246), Expect = 3e-53 Identities = 511/758 (67%), Gaps = 15/758 (2%) Strand=Plus/Plus Query 11462 CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTAT-AAGATC 11520 || || |||| ||||| ||||||||| |||| | |||||||| || || ||| | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGA 11580 || || | || | | |||||||||| |||||| |||||| || | ||||| || Sbjct 6170 -ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGA 6228 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTA--ATAA-ATGTTTAAACATTAAACACGCAAA 11637 | | | || | ||| | || || | | |||| ||||||||||| || ||| || || Sbjct 6229 C-TCAACACGTTCTTTG--GGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAA 6285 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||||||||||| |||||||||||||| |||| |||||| ||| | | ||| ||||| Sbjct 6286 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 6345 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 | |||||||| || | ||| |||||||| ||||| ||||||||| || | || || Sbjct 6346 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTC 6405 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTT 11814 ||| |||||||| || |||| | |||| || | || || | | ||||| | Sbjct 6406 CACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATC 6465 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCA--TTCCATTGTTTCTATAGCGTTAAATAAA 11872 | ||||| | ||| || || || || || ||| | ||| ||||| || | | Sbjct 6466 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTGCT--TATGGCGTTGAAGAGA 6523 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 ||||| || ||| | | |||||||| ||||||||| |||||||| || Sbjct 6524 AAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAG 6583 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 |||||||| || |||||||| || | |||||||||||| || |||||| | ||| || Sbjct 6584 TGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACT 6643 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | || | |||| | ||||| ||||| || ||||| | ||||| || Sbjct 6644 TCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAG 6703 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 |||| | | ||| || | ||| | |||| ||||||| | | Sbjct 6704 GCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGA 6763 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 ||||| |||||||| || ||||| || ||||||||| || || | | ||||| | Sbjct 6764 TCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAA 6823 Query 12173 TTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 | ||||| ||| || || | || ||||||| ||||| Sbjct 6824 TGCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAA 6861 >seq13135 Length=7929 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 ||| || || || |||| ||| ||||| | || |||| ||| | |||||| | || || Sbjct 5937 TCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATCGTAAATGCC 5878 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||||||||| || || || || | | | ||||||||| || | || || ||||| Sbjct 5877 TTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGGTTTAGGAGT 5818 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATA 38474 || |||||||| | ||| || || |||||| | ||||| ||||| |||| | ||||| Sbjct 5817 CCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACATTAAGTTATA 5758 Query 38475 TGT 38477 || Sbjct 5757 CGT 5755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468278420377360