Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12381 248 1e-60 seq13135 107 3e-18 >seq12381 Length=8583 Score = 248 bits (274), Expect = 1e-60 Identities = 616/931 (66%), Gaps = 53/931 (6%) Strand=Plus/Plus Query 35847 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 35906 || |||||||||| || ||| |||||||| || || || || || || ||||| | Sbjct 5931 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 5990 Query 35907 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG------------------- 35947 | ||||| | |||||| ||||||||||| || || |||||| Sbjct 5991 TCCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 6050 Query 35948 ---ATAACA--------------TTATAAAtttttttAAATCCCAATTCAGAAATCAATC 35990 | |||| ||| ||| |||| | | || | |||| | | | Sbjct 6051 AGGAAAACAATTAAATAGAAGATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 6110 Query 35991 TATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 36050 | || |||| |||||| ||||| ||||| || |||||||| || || | | | Sbjct 6111 TGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGA 6170 Query 36051 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGAT 36109 |||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 6171 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGAC 6229 Query 36110 ATTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAAA 36166 || ||||| | || || | |||| ||||||||||| | ||| |||||| Sbjct 6230 TCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAA 6286 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 6287 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 6346 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 || || || || |||||||| ||||| | ||||| |||||||| || | ||||| Sbjct 6347 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCC 6406 Query 36287 ACTGCCGCAAAGGCAA-TAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTT 36342 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 6407 ACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATC 6465 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGA 36400 | ||||| | ||||| || ||||||| | ||| || ||| || || |||||| Sbjct 6466 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGA 6523 Query 36401 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 36460 ||| |||| ||| ||||| | ||||||||||| || | | |||||||| || Sbjct 6524 AAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAG 6583 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 ||||| || || || || || || | ||| |||||||| | | |||| | |||||| ||| Sbjct 6584 TGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACT 6643 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| || || ||||| | || || || || |||||||| || ||||| || Sbjct 6644 TCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAG 6703 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 || || || | ||| |||| ||| | ||| | ||||| ||| | Sbjct 6704 GCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGA 6763 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 ||||| |||| |||||| |||||||| |||||||| || || | ||||| ||||| | | Sbjct 6764 TCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAA 6823 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAA 36731 | ||||| || || |||| || || |||| Sbjct 6824 TGCCAGACATCGTGGTATTCTATGGGGAAAA 6854 >seq13135 Length=7929 Score = 107 bits (118), Expect = 3e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||||||||| || ||||| || || | || ||| | |||| ||||| ||| Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 || ||| || || ||||| || ||||||| || | ||| ||| ||| | |||||| Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448 || ||||| ||||||||||| || |||| | | |||||||| || || | || | Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 5827 Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 | ||| || || ||||| | || || ||||| || |||||||| |||||||| | Sbjct 5826 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACAT 5767 Query 66509 TAGATTGTACGTCT 66522 || || ||||||| Sbjct 5766 TAAGTTATACGTCT 5753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 66744 GGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA 66803 |||||||||||| || |||||| | ||| ||||||| || | || || | Sbjct 4591 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 4532 Query 66804 AA--TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861 || ||| ||| ||||| |||||||||||||| |||| | | ||| || | ||||| Sbjct 4531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATGG 4474 Query 66862 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 4473 CATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAT 4415 Query 66921 TCTACCGTTGTTACTCCA 66938 ||||| || || |||||| Sbjct 4414 TCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657826691605960