Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12381 86.0 6e-12 >seq12381 Length=8583 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||||| | | |||||||| | ||||| | | ||| | |||||||| ||||| Sbjct 6486 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGC 6427 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682 | || || ||||| |||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 6426 TTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTC 6367 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | | | || | || | | ||||| || || | |||||||| || || || | Sbjct 6366 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 6308 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||| | || ||||| || ||| Sbjct 6307 AGACGAAGGACTACATTGTGATTTCGCTTGT 6277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495803138544800