Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12381 260 2e-64 seq13135 102 1e-16 >seq12381 Length=8583 Score = 260 bits (288), Expect = 2e-64 Identities = 629/951 (66%), Gaps = 47/951 (5%) Strand=Plus/Plus Query 49649 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 49708 || |||||||||| || ||| |||||||| || || || || || || ||||| | Sbjct 5931 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 5990 Query 49709 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt- 49767 | ||||| | |||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 5991 TCCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 6050 Query 49768 ----------ttAAATCCCA-ATTCAGAAA-----------------TCAATC------- 49792 |||||| | ||| | ||| |||| | Sbjct 6051 AGGAAAACAATTAAATAGAAGATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 6110 Query 49793 TATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 49852 | || |||| |||||| ||||| ||||| || |||||||| || || | | | Sbjct 6111 TGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGA 6170 Query 49853 CTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATC 49912 |||| || || | | | ||| || ||||| || ||||| ||| |||| || || Sbjct 6171 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACT 6230 Query 49913 TAACGGTTTCTTCACTCGGTGGATGCA--ATAA-ATGTTTAAACATCAAACATGCGAAAT 49969 ||| ||||| | || || | |||| ||||||||||| | ||| ||||||| Sbjct 6231 CAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAAT 6287 Query 49970 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 50029 | || || || || ||||||||||| |||| ||| ||| ||| | ||||| ||||| | Sbjct 6288 CACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAA 6347 Query 50030 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTA 50089 | || || || |||||||| ||||| | ||||| |||||||| |||| ||||| | Sbjct 6348 GACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCA 6407 Query 50090 CTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTT 50146 |||| ||||| ||||| | | ||| || || | | | ||| ||||| | | Sbjct 6408 CTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTA 6467 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAG 50205 ||||| | ||||| || ||||||| | ||| | |||||| || |||||| || Sbjct 6468 ATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAG 6526 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | |||| ||| ||||| | || ||||| || || | | |||||||| || ||| Sbjct 6527 TCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGA 6586 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || || ||||| | ||| |||||||| | | |||| | |||||| |||||| Sbjct 6587 ATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTCT 6646 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 || || ||||| | || || || || |||||||| || ||||| || || Sbjct 6647 TGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGCT 6706 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCT 50445 || || | ||| ||||| ||| | ||| | ||||| ||| |||| Sbjct 6707 AACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGATCT 6766 Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| || |||||||| |||||||| || || | ||||| ||||| | || | Sbjct 6767 TTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGC 6826 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 |||| || || |||| || ||||||| || || | | ||| |||||| Sbjct 6827 CAGACATCGTGGTATTCTATGGGGAAAAGGACGAAGCGGTGTGGGTTTGGT 6877 >seq13135 Length=7929 Score = 102 bits (112), Expect = 1e-16 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 80623 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 80682 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 4591 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 4532 Query 80683 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 || ||| ||| |||||||||||||||||||| |||| | | || || ||||||| Sbjct 4531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATGG 4474 Query 80741 CATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 4473 CATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAT 4415 Query 80800 TCTACCGTTGTTACTCCA 80817 ||||| || || |||||| Sbjct 4414 TCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717891089373160