Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12381 196 5e-45 >seq12381 Length=8583 Score = 196 bits (216), Expect = 5e-45 Identities = 451/677 (67%), Gaps = 52/677 (8%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| || |||||||||||||| || ||||| | |||||| ||||| Sbjct 5953 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCGATTGATATGTTTTC 6012 Query 13643 CATAAAATCAAATGGATTT----ATTGA--CAT---------AAACACTTTA-------- 13679 ||| || ||||| ||||| | ||| ||| ||||| || | Sbjct 6013 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 6072 Query 13680 -------------TCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATA 13726 ||| |||| ||||| | |||| || ||||| ||||| |||||||| Sbjct 6073 TTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATATA 6132 Query 13727 TTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAA 13786 ||| |||| | | |||||||| || |||| | || || | | || |||||| Sbjct 6133 CTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAA 6192 Query 13787 TTCTTTTTCTAT-AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAG 13845 || | |||||| ||| || |||||| |||| || || | || || | ||| Sbjct 6193 CTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCTTTGG---GAG 6248 Query 13846 GATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTC 13902 | | ||| | | |||||||| | || ||| || ||||||||||| || || || |||| Sbjct 6249 GCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTC 6308 Query 13903 TACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAA 13962 |||| || | ||| || ||| | | ||| ||||| | |||||||| || | ||| | Sbjct 6309 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 6368 Query 13963 ATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATC 14022 |||| || ||||| || ||||| || | || || ||||| ||||| || | ||| | Sbjct 6369 ATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGC 6428 Query 14023 GTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttt 14082 ||||| |||| | | ||| | ||||| | | ||||| | || ||||| Sbjct 6429 GTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAG 6488 Query 14083 tAATAAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTT 14138 || | || | ||| || || || || || | | | ||| | ||||| ||| || Sbjct 6489 CAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTT 6546 Query 14139 GAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATC 14198 | |||||||||||||| | ||| |||||||||||||| || || || ||||||||| Sbjct 6547 G--ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATC 6604 Query 14199 TGAAAACCATAAAAGCA 14215 || | ||||| || || Sbjct 6605 TGCATTCCATAGAAACA 6621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479475729034600