Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq12381 181 1e-40 >seq12381 Length=8583 Score = 181 bits (200), Expect = 1e-40 Identities = 458/690 (66%), Gaps = 56/690 (8%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||||||| ||||| || ||||| |||||||| || ||||| | |||||| ||||| Sbjct 5953 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCGATTGATATGTTTTC 6012 Query 13431 CATAAAATCGAATGGATTTGT-----TGA--CAT---------AAACACTTTA------- 13467 ||| || || || ||||| || ||| ||| ||||| || | Sbjct 6013 CATGAAGTCAAAAGGATT-GTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAG 6071 Query 13468 --------------TCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATAT 13513 ||| |||| ||||| | | || || ||||| ||||| ||||||| Sbjct 6072 ATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATAT 6131 Query 13514 ATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAA 13573 | ||| |||| | | |||||||| || |||| | || || | | | ||||| Sbjct 6132 ACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAA 6191 Query 13574 ATTCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGA 13632 | || | |||||| ||| || ||||| |||| || || || | || || | || Sbjct 6192 ACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCTTTGG---GA 6247 Query 13633 GGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 13689 || | ||| | | |||||||| | || ||| || ||||||||||| || || || ||| Sbjct 6248 GGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCT 6307 Query 13690 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 13749 ||||| || | ||| || ||| | | ||| ||||| | |||||||| || | ||| Sbjct 6308 CTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAG 6367 Query 13750 AATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGT 13809 ||||| || || || || ||||| || | || || ||||| ||||| || | || Sbjct 6368 AATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAG 6427 Query 13810 CGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttttt 13869 |||||| |||| | | ||| | ||||| | | ||||| | || ||||| Sbjct 6428 CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTA 6487 Query 13870 ttAATAAAA--TCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTAC 13924 || | || | ||| || || || ||||| | || || |||| ||||| ||| Sbjct 6488 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTAGAGTCT 6544 Query 13925 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTA 13984 ||| |||||||||||||| | ||| |||||||||||||| || || || ||||||| Sbjct 6545 TTG--ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTA 6602 Query 13985 TCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| | ||||| ||||| | | | |||| Sbjct 6603 TCTGCATTCCATAGAAACAACGAACCTCTG 6632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478337128097160