Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12381 273 3e-68 seq13135 111 2e-19 >seq12381 Length=8583 Score = 273 bits (302), Expect = 3e-68 Identities = 636/953 (67%), Gaps = 51/953 (5%) Strand=Plus/Plus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 || |||||||||| || ||| |||||||| || || || || || || ||||||| Sbjct 5931 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 5990 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt- 41872 | ||||| | |||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 5991 TCCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 6050 Query 41873 ----------ttAAATCCCA-ATTCAGAAA-----------------TCAATC------- 41897 |||||| | ||| | ||| |||| | Sbjct 6051 AGGAAAACAATTAAATAGAAGATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 6110 Query 41898 TATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 41957 | || ||||| ||||| ||||| ||||| || |||||||| || || | | | Sbjct 6111 TGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGA 6170 Query 41958 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGAT 42016 |||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 6171 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGAC 6229 Query 42017 CTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAAA 42073 || ||||| | || || | |||| ||||||||||| | ||| |||||| Sbjct 6230 TCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAA 6286 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || || || || || || |||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 6287 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 6346 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 || || || || |||||||| ||||||| ||||| |||||||| |||| ||||| Sbjct 6347 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCC 6406 Query 42194 ACTGCCGCAAAGGCAA-TAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTT 42249 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 6407 ACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATC 6465 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGAT 42308 | ||||| | ||||| || ||||||| | ||| | |||||| || |||||| Sbjct 6466 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAA 6524 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 ||| |||| ||| ||||| | |||||||| || || | | |||||||| || | Sbjct 6525 AGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGT 6584 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 |||| || || || || ||||| | ||| |||||||| | |||| | || ||| |||| Sbjct 6585 GAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTT 6644 Query 42429 CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 || || || ||||| | || ||| || || |||||||| || ||||| || | Sbjct 6645 CTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGG 6704 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATAT 42548 | || || | ||| |||| ||| | | |||| | ||||| ||| || Sbjct 6705 CTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGAT 6764 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 |||| |||| ||| || ||||| || |||||||| || ||| | ||||| ||||| | || Sbjct 6765 CTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAAT 6824 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 ||||| ||| || |||| || ||||||| || || | | ||| |||||| Sbjct 6825 GCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAGCGGTGTGGGTTTGGT 6877 >seq13135 Length=7929 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290 ||||||||| || | ||||| || || | || ||| | |||| ||||| || Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350 || ||| || || ||||| || ||||||| || | ||| ||| ||| | |||||| Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 72351 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 72410 || ||||| ||||||||||| || |||| | | |||||||| || || | || | Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 5827 Query 72411 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAG 72470 | ||| || || ||||| | || || ||||| || |||||||| |||||||||| Sbjct 5826 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACAT 5767 Query 72471 TAGATTGTACGTCT 72484 || || ||||||| Sbjct 5766 TAAGTTATACGTCT 5753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 72706 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 72765 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 4591 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 4532 Query 72766 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 || ||| ||| |||||||||||||||||||| |||| | | || || | ||||| Sbjct 4531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATGG 4474 Query 72824 CATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 |||| || |||||| |||| | || | | || | | || ||||||||| | |||||| Sbjct 4473 CATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAT 4415 Query 72883 TCTACCGTTGTTACTCCA 72900 ||||| || || |||||| Sbjct 4414 TCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670786273062440