Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12381 178 2e-39 seq13135 93.3 6e-14 >seq12381 Length=8583 Score = 178 bits (196), Expect = 2e-39 Identities = 490/738 (66%), Gaps = 30/738 (4%) Strand=Plus/Minus Query 125031 TACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG 125090 || || |||||| ||||| |||||||| || |||||||| ||| | ||||| || || Sbjct 6819 TATAAGAAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTGGATTTATCCAAAGATCTC 6760 Query 125091 -TACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGC 125149 ||| |||||||| || || | | || || | || ||||| || | || || Sbjct 6759 ATAC-ATTGGGAGTCT---TTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGC 6704 Query 125150 CTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA 125209 ||||||||| | || || || ||| ||| || || || ||| ||| |||||| Sbjct 6703 CTTCTTTGCGGCAAGTGACGGCATTGTCCTCGAGAACCTCCTGGAACGCTTCAGTCAAGA 6644 Query 125210 GTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGC 125268 | ||||||||||| |||| ||| || ||| | || || || ||||| | | Sbjct 6643 AGTCCAGATTCCAGAGGT-TCGTTGTTTCTATGGAATGCAGATAGCTATCGAGAATATTC 6585 Query 125269 ACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACA 125328 |||| |||||||||||| | | ||||| | ||||| || | || | || Sbjct 6584 ACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCTAAAGAAAGGGACT 6525 Query 125329 TGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTC 125388 | ||||| ||||| || || | | | | | |||||||||||| |||| ||| Sbjct 6524 TTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGG-CATTA 6466 Query 125389 G-GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 | ||||| | ||| || ||| | | || || | | || || || || || || Sbjct 6465 GATTGGATTGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTG 6406 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 || || |||| ||||| ||||| ||||| || || || ||||| ||||| || || || Sbjct 6405 GAAGGTGTCTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTT 6346 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||||| |||||| | || || || || || | ||||||| || ||||| ||||| Sbjct 6345 ATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGAT 6286 Query 125568 TTTGCCATTCTACTGTTT-CGCA-ACTATC----TGCGTCCCGAGTGCAGATCCAGCGAT 125621 || || |||| ||||| || | |||| || |||| | ||| | | | | Sbjct 6285 TTCGCTTGTCTATTGTTTAAACATATTATCAAAAAGCCTCCCAA----AGAAC--GTGTT 6232 Query 125622 GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAA 125681 || |||| || ||| || || || ||||||||| |||||| || ||||| Sbjct 6231 GA----GTCA-----ATAATAAGAGAGGCGGTTCTGATAGAACAGGAGTTTTTATCCGAA 6181 Query 125682 TCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTT 125741 ||||||| |||||| | ||||| ||||| ||||| || ||||| |||| || || ||| Sbjct 6180 GCCCTACCAGTCAGCTTAATTGGGATGAATTGCAAACTGATGTGTCAGTATATTGAATTT 6121 Query 125742 GTGGCAGATCGTCTACTG 125759 | || || | |||||| Sbjct 6120 ATCGCTGACAGGCTACTG 6103 >seq13135 Length=7929 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || ||||| || | ||| | ||||| |||||||||||| | || Sbjct 6150 CAAGGAGGTAACAAGCGTCCAGGAGCCTTTGCCATGTACTTAGAACCTTGGCACCCTGAT 6209 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||| | || || || ||||| ||||| ||||| ||||| || || ||||| Sbjct 6210 GTGTTTCAGTTCATAGAAATGCGGAAAAATACTGGCGCCGAAGAAATTCGTGCACGGGAC 6269 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 ||||| | ||| |||||| | || || ||||||||| ||||| Sbjct 6270 TTGTTCTTTGCCCTCTGGATACCTGACTTGTTCATGCGCCGCGT 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740669504756440