Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12381 232 6e-56 >seq12381 Length=8583 Score = 232 bits (256), Expect = 6e-56 Identities = 492/723 (68%), Gaps = 26/723 (4%) Strand=Plus/Plus Query 12983 CTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTT 13042 |||||||| | ||| || || ||||| ||| | | || ||||| || ||||| | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 13043 ACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCT 13102 || || | ||||| | |||||| | | |||||| ||| || || | | ||| | Sbjct 6170 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTAT-TGA 6228 Query 13103 CTTATTACGTTCTCTAATGGAGGATTT--GATAG-ATGCTTAAACATCATACATGCAAAA 13159 || | ||||||| | ||||| ||| |||| ||| ||||||| | ||| || ||| Sbjct 6229 CTCAACACGTTCTTTG--GGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAA 6286 Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATA 13219 ||||| || | |||||| |||||||| |||| || || ||| | || || |||||| Sbjct 6287 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 6346 Query 13220 AGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCA 13279 || |||||||| |||| ||| |||||||| ||||| ||| |||||||| | ||||| Sbjct 6347 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCC 6406 Query 13280 ACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTC-TCTATCCACTT 13338 ||||||||||| || | || | ||| || | ||| |||| | || | ||||| | Sbjct 6407 ACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTA-GATTTAGAATCACCAATCCAATC 6465 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 | ||||| | || |||| ||| || | | || ||| ||||| || | | | Sbjct 6466 TAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAA 6525 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 | |||| ||| |||| || || ||||| || ||||| |||||||| || || Sbjct 6526 GTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTG 6585 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||| || || ||||| || | ||||| ||||| | | |||||| | ||| ||||| Sbjct 6586 AATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTC 6645 Query 13519 -GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 || | || | ||| | ||| ||| || || |||||||| || ||||| || | Sbjct 6646 TTGACT-GAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGG 6704 Query 13578 CAAGTATGT-GCTTAATAAAttttttttCGTTTTCTGACAACTTTAA-------CCAATC 13629 | | | || | || ||| | |||| | ||||||| | ||||| Sbjct 6705 CTAACACGTAGGATATGAAA-----TGACGTTCCC---CAACTTTTAAAGACTCCCAATG 6756 Query 13630 TGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTT 13689 | | |||||| |||||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 6757 TATGAGATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTT 6816 Query 13690 ATA 13692 ||| Sbjct 6817 ATA 6819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430761428454738