Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12381 190 5e-43 seq16733 107 4e-18 seq6966 93.3 1e-13 seq14408 87.8 4e-12 >seq12381 Length=8583 Score = 190 bits (210), Expect = 5e-43 Identities = 376/551 (68%), Gaps = 13/551 (2%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| || || |||||||||||||| ||||| || ||| | || | || | ||| ||| Sbjct 6812 AGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTGGATTTATCCAAAGATCTCATACATT 6753 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 || | ||||||| | ||| | || ||||| || | | || || ||||| | Sbjct 6752 GGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGG 6693 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 ||||| || || || ||| || || | || ||| ||||||| || ||||||| Sbjct 6692 CAAGTGACGGCATTGTCCTCGAGAACCTCCTGGAACGCTTCAGTCAAGAAGTCCAGATTC 6633 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | || | | ||||| || ||| | ||||||||||| || |||||||| || || |||| Sbjct 6632 CAGAGGTTCGTTGTTTCTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATGT 6573 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051 || | ||||||| ||||| || || | || || |||| | |||| || |||| Sbjct 6572 ACTCTTTATTAATTGATACATACATCAAAGACTCTAAAGAAAGG----GACT-TTCTCTT 6518 Query 269052 CTATG--AGAACTA--TGGACT-GTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106 | | | | || | | ||| |||| ||||| || | ||||| | | ||||| Sbjct 6517 CAACGCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGAT 6458 Query 269107 AAACGAT---AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTAT 269163 ||| | | ||| | |||| | |||||||||||||| || || |||||| | Sbjct 6457 TGGTGATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGT 6398 Query 269164 ATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGG 269223 || ||||| || ||||| ||||| || ||| | |||||| |||| |||||||| || Sbjct 6397 CTTTTTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGG 6338 Query 269224 ATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | | |||| || ||||| || || || |||||||| |||| || || |||||||| Sbjct 6337 ACTGTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTG 6278 Query 269284 TTTATTATTTA 269294 | |||| |||| Sbjct 6277 TCTATTGTTTA 6267 >seq16733 Length=5584 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104328 TTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 |||| || || | || | ||| || ||||| | ||| ||||| ||||| ||||| |||| Sbjct 3189 TTATACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGT 3248 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 | || ||||||| || ||||| |||||||| ||||||||||||| | ||||| || | Sbjct 3249 CGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTG 3308 Query 104448 GAGGTATTCCTTCTTTA 104464 | || || ||||||||| Sbjct 3309 GTGGGATGCCTTCTTTA 3325 >seq6966 Length=15056 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505 ||| || || ||||||||||| || ||||| || || ||||| || | ||| || || || Sbjct 1 AGGTGGGATCCCTTCTTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGG 60 Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || ||||||||||| | |||||| |||||||||||||| Sbjct 61 CTCAACTTCCAAAGTGATTGTCTTACCAGTTAATGTTTTCACAAATATCTGCAT 114 >seq14408 Length=7032 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || || ||||| ||||| ||||| || | ||||| ||||| || ||| Sbjct 7031 ATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACC 6972 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || | || || ||||| || || | ||| ||||| |||||||||||| Sbjct 6971 TCCAACGTGATCGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 6924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150777785827852