Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq128 98.7 1e-15 seq1712 91.5 2e-13 seq3479 89.7 6e-13 >seq128 Length=73186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/259 (70%), Gaps = 16/259 (6%) Strand=Plus/Minus Query 164521 GGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCT 164580 || ||| | ||| | || || |||||| ||||||||| ||||||| ||| |||| | Sbjct 72865 GGTATTCTTTTATACGGTCCACCTGGTACTGGTAAAACACTAATGGCACGACAAATTGGT 72806 Query 164581 CAA--GCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACA 164635 || |||| ||| || || || ||||||||| |||||||| |||| | | Sbjct 72805 AAAATGCTT---AATGCACGTGAACC--TAAAATTGTCAATGGTCCAAGTATATTAGATA 72751 Query 164636 AATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAAC 164695 ||||||| ||||| || ||||| ||| | | || || || || |||||||||||| Sbjct 72750 AATATGTTGGTGAATCTGAAGCGAATATCCGTAAATTATTCGCTGATGCTGAAGAAGAAG 72691 Query 164696 AAAAGAAAGCAGGTTTAGCTA---GTAAATTACATGTTATTGTTTTTGATGAGATAGATG 164752 ||| || ||| | | |||| | ||| ||| ||||| | |||||||| || |||| Sbjct 72690 AAA--AACGCATGGGT-GCTAAATCTGCATTGCATATTATTATATTTGATGAAATTGATG 72634 Query 164753 CTCTTTGCAAAAAACGTGG 164771 | |||| ||| |||||| Sbjct 72633 CGATTTGTAAATCACGTGG 72615 >seq1712 Length=34227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| || ||||| || ||||||||||||||||||||| || || || || Sbjct 17813 CAAAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 17754 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| |||||||||| ||||||||| |||| ||||| ||||| Sbjct 17753 ATTACACCAGATATTATTATTAATCCACATGCTATTCCTAGTCGTATGAC 17704 >seq3479 Length=24095 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Minus Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281 |||||||||||||| | | ||||||| | || || |||| ||| ||||||| Sbjct 4729 TCACCTTCTTCACGCTCAGTAAATCCCAGTCCATCTAAAA---ATTCACGAGATCCATTT 4673 Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339 |||||||| | ||||||| ||||||| | || | ||||||||||||||| || Sbjct 4672 GCATCCCAGAAATGTACA--TTTTTTTCCGCCAGTTCACGAGAATTTGTAGATCCACGAA 4615 Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 |||||||| || |||||||| ||||| || |||||| Sbjct 4614 TAAACCATAATAGCTCTTCTACGATTCCGCGAAAAAACA 4576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595558653260400