Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq23189 181 2e-41 seq3055 181 2e-41 seq260 158 2e-34 seq4470 141 1e-29 seq7963 111 2e-20 seq9442 107 3e-19 seq2623 98.7 2e-16 >seq23189 Length=2862 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||||| | |||| || || |||||||| || ||||||||||| || || Sbjct 477 GCTAAGAGACATCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACCAAGCCTGCAAT 419 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| || ||||| | || |||||| |||| || |||| Sbjct 418 CCGTCGTCTGGCTCGTCGTGGTGGTGTGAAGCGCATTTCAGGATTGATCTACGAGGAGAC 359 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 358 TCGTGGTGTACTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACGGA 299 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 298 ACATGCCAAGAGGAAGACAGTGACAGCTATGGACGTTGTGTACGCTTTGAAACGCCAAGG 239 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 238 TCGTACTCTGTACGGTTTCGGTGGTTAAT 210 >seq3055 Length=25840 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||||| | |||| || || |||||||| || ||||||||||| || || Sbjct 10559 GCTAAGAGACATCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACCAAGCCTGCAAT 10501 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| || ||||| | || |||||| |||| || |||| Sbjct 10500 CCGTCGTCTGGCTCGTCGTGGTGGTGTGAAGCGCATTTCAGGATTGATCTACGAGGAGAC 10441 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 10440 TCGTGGTGTACTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACGGA 10381 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 10380 ACATGCCAAGAGGAAGACAGTGACAGCTATGGACGTTGTGTACGCTTTGAAACGCCAAGG 10321 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 10320 TCGTACTTTGTACGGTTTCGGTGGTTAAT 10292 >seq260 Length=62787 Score = 158 bits (174), Expect = 2e-34 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||||| | |||| || || |||||||| || ||||||||||| || || Sbjct 1381 GCTAAGAGACATCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACCAAGCCTGCAAT 1323 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||||||||| || ||||| | || |||||| |||| || |||| Sbjct 1322 CCGTCGTCTGGCTCGTCGTGGTGGTGTGAAGCGCATTTCAGGATTGATCTACGAGGAGAC 1263 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 1262 TCGTGGTGTACTGAAGGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACGGA 1203 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || || || | ||||| || || | ||||| | || || || ||||| Sbjct 1202 ACATGCCAAGAGGAAGACAGTGACAGCTATGGACGTTGTGTACGCTTTGAA 1152 >seq4470 Length=20648 Score = 141 bits (156), Expect = 1e-29 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| ||||| || || ||||| ||||| ||||| || ||||||||||| || Sbjct 735 CGCGACAACATACAAGGTATTACGAAGCCTGCTATTCGTCGCCTTGCTCGTCGTGGAGGT 794 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| | ||||| ||| | ||||| || | ||||| ||| ||||| | ||||| Sbjct 795 GTGAAGCGCATTTCTGGCTTGATTTATGAGGAAACTCGTGGTGTGTTGAAAGTATTCCTA 854 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||| | ||| || || || || || || || ||||| || ||||| || Sbjct 855 GAAAACGTTATTCGTGACGCCGTCACATACACGGAACATGCCAAACGAAAAACTGTAACT 914 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| |||||||| || || |||| | || |||||||| Sbjct 915 GCTATGGACGTGGTGTATGCTTTGAAACGCCAGGGTCGTACATTGTACGGTTTTGG 970 >seq7963 Length=13437 Score = 111 bits (122), Expect = 2e-20 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||||| | |||| || || |||||||| || ||||| ||||| || || Sbjct 1421 GCTAAGAGACATCGCA-AGGTCTTACGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 1363 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||| ||||||||||||| || ||||| | || ||||| |||| | |||| Sbjct 1362 CCATCGTCTGACTCGTCGTGGTGGTGTGAAGCGCATTTCAGGATTAATCTACTAGGAGAC 1303 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 ||||| ||| | ||||| || || ||| ||| ||| |||| Sbjct 1302 TCGTGGTGTACTAAAGATGTTTCTGGAGAACGTGATCTGTGAT 1260 >seq9442 Length=11519 Score = 107 bits (118), Expect = 3e-19 Identities = 187/269 (70%), Gaps = 5/269 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAG-ATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| | ||||| || |||| | | || |||||||| || | | ||||| | || Sbjct 1883 GCTAAGAGACATCGAAGGATCT-TACATGACAACATCCAGGGTTTTAAAAAGCCTGAAAT 1941 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| | ||||||| || || || | || |||||| |||| || | || Sbjct 1942 CCGTCGTCTGGC---TGGTGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGGGAC 1998 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| | || || ||| ||| |||| ||||| || ||| || || Sbjct 1999 TCGTGGTGTACTAAAGGTGTTTCTGGAGAACGTGATCCGCGATGCAGTCACCTACACGGA 2058 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || | || ||||| || || | |||||||| || || || ||||||| ||||| Sbjct 2059 ACATGTCAAGAAGAAGACAGTGACAGCTATGGATATTGTGTACGCTTTGAAACACCAAGG 2118 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || | ||| || |||||| Sbjct 2119 TCGTACTTTGTACGATTTCGGTGGTTAAT 2147 >seq2623 Length=28098 Score = 98.7 bits (108), Expect = 2e-16 Identities = 167/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| || || | |||||||||||| ||||||||||| | || Sbjct 21892 GACAACATCCATGGTATCACAAAACCTTCAATCCGTCGTCTGACTCGTCGTGGT-GTGTG 21950 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | || ||||| ||| || |||| ||||| ||| || || | | || | Sbjct 21951 AAGCGCATTTCACGATTGATCTGAGAGGAGACTCGTGGTGTACTGTAGGTGATGCTGGAA 22010 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| ||| |||||| || || || || || || || | ||| | || | | Sbjct 22011 AACGTGATCTGTGATGCAGTCACGTACACGGAACATGCCAAGAGGAAGTCAGTGGCAGCT 22070 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || ||||||| ||| || |||| | || ||||| || ||||| Sbjct 22071 ATGGACGTGGTGTACGCTTTGAAACATCACGGTCGTACTTTGTACGGTTTCGGTGGTTAA 22130 Query 16700 T 16700 | Sbjct 22131 T 22131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79036736018817