Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq12381 129 6e-25 >seq12381 Length=8583 Score = 129 bits (142), Expect = 6e-25 Identities = 508/793 (64%), Gaps = 20/793 (3%) Strand=Plus/Plus Query 21268 AGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTAT 21327 ||||||| | | || | | |||| ||||| | || || || || | |||||| || Sbjct 6070 AGATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAAT 6129 Query 21328 ATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAA 21387 ||| |||||||| | || |||||||| || || || | || || || |||| | || Sbjct 6130 ATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAA 6189 Query 21388 AAAAGATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAG 21446 ||| | |||||| ||| || || || ||||| | | | | | || || Sbjct 6190 AAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTAT-----TGACTCAACACGTTCTTT 6243 Query 21447 GGGGA----TACAATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTC 21501 ||| | ||||| |||||||||| | ||| || ||||||||||| | ||||| Sbjct 6244 GGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTC 6303 Query 21502 ATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAA 21561 || ||||| ||||||||||| ||| | | || ||||| | |||| || || | Sbjct 6304 GTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAG 6363 Query 21562 CCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAA 21620 ||| ||||| | ||||| ||| || ||||| || | || || || || ||||| |||| Sbjct 6364 CCAGAATATAGCTGCAAA-GCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAA 6422 Query 21621 CTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCT 21680 |||| ||||| | | ||||||| ||| ||||| | | |||||| | |||| Sbjct 6423 CTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCT 6482 Query 21681 TTTCTTTAATACAA--TCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTAC 21738 ||| || |||| | | ||| | || || || || ||| | |||| | || Sbjct 6483 TTTTAGCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTC-TTTAG 6539 Query 21739 A-TCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCG 21797 | || | ||| | ||||||||||| || ||||| || || | Sbjct 6540 AGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAG 6599 Query 21798 CTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTT 21857 ||||||| | ||| || ||||| | |||||| | || || || | || |||| Sbjct 6600 CTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTT 6659 Query 21858 GAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTA 21917 | ||| || || || || ||||| || ||||| || || || | | || Sbjct 6660 CCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATA 6719 Query 21918 TAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTA 21977 | |||| ||||| | || |||| | ||||| || | |||||| |||||||| | Sbjct 6720 TGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCA 6779 Query 21978 CTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTAT 22037 | ||||| |||||||| || | |||||| ||||| | | ||||| ||| | | Sbjct 6780 CCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGT 6839 Query 22038 ATATTATTGGAAA 22050 || ||| || || Sbjct 6840 ATTCTATGGGGAA 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531621093315560