Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12381 244 1e-59 seq13135 96.9 4e-15 >seq12381 Length=8583 Score = 244 bits (270), Expect = 1e-59 Identities = 636/966 (66%), Gaps = 49/966 (5%) Strand=Plus/Plus Query 32993 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33052 || |||||||||| || ||| |||||||| || || || || || || ||||| | Sbjct 5931 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 5990 Query 33053 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttt- 33111 | ||||| | |||||| ||||||||||| ||||| |||||| | || ||| || | Sbjct 5991 TCCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 6050 Query 33112 ----------ttAAATCCCA-ATTCAGAAA-----------------TCAATC------- 33136 |||||| | ||| | ||| |||| | Sbjct 6051 AGGAAAACAATTAAATAGAAGATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCC 6110 Query 33137 TATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAA 33196 | || |||| ||||| ||||| ||||| || |||||||| || || | | | Sbjct 6111 TGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGA 6170 Query 33197 CTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATC 33256 |||| || || | | | ||| || ||||| || ||||| ||| |||| || || Sbjct 6171 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACT 6230 Query 33257 TAACGGTTTCTTCACTCGGTGGATGCA--ATAA-ATGTTTAAACATCAAACATGCGAAAT 33313 ||| ||||| | || || | |||| ||||||||||| | ||| ||||||| Sbjct 6231 CAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAAT 6287 Query 33314 CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTA 33373 | || || || || ||||||||||| |||| ||| ||| ||| | ||||| ||||| | Sbjct 6288 CACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAA 6347 Query 33374 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTA 33433 | || || || |||||||| ||||| | || || |||||||| |||| ||||| | Sbjct 6348 GACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCA 6407 Query 33434 CTGCAGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTT 33489 |||| ||||| |||| |||| | ||| || || | | ||| ||||| | | Sbjct 6408 CTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCT 6466 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC-TATGGCATTAAAGAGATA 33548 ||||| | ||||| || ||||||| | ||| | |||||| || |||||| | Sbjct 6467 AATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAA 6525 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 || |||| ||| ||||| | || ||||| || || | | |||||||| || || Sbjct 6526 GTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTG 6585 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 ||| || || || || ||||| | ||| |||||||| | | |||| | |||||| ||||| Sbjct 6586 AATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTC 6645 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | || || |||||| | || || || || |||||||| || ||||| || || Sbjct 6646 TTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGC 6705 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || || | ||| |||| ||| | | ||| | ||||| ||| ||| Sbjct 6706 TAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGATC 6765 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 ||| |||| ||| || |||||||| |||||||| || || | ||||| ||||| | | Sbjct 6766 TTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATG 6825 Query 33849 CCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGAT 33908 ||||| || | |||| || ||||||| || || | | ||| |||||| || | Sbjct 6826 CCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAGCGGTGTGGGTTTGGTTTGAGTAA 6885 Query 33909 GGGTTC 33914 |||||| Sbjct 6886 GGGTTC 6891 >seq13135 Length=7929 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 63900 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 63959 |||||||||||| || |||||||| ||| ||||||| || | || || | Sbjct 4591 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGAA 4532 Query 63960 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 || ||| ||| |||||||||||||||||||| |||| | | || || | ||||| Sbjct 4531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATGG 4474 Query 64018 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||| || |||||| |||| | || | | || | | |||||||||||| | |||||| Sbjct 4473 CATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAAT 4415 Query 64077 TCTACCGTTGTTACTCCA 64094 ||||| || || |||||| Sbjct 4414 TCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622619615428040