Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq12381 86.0 6e-12 >seq12381 Length=8583 Score = 86.0 bits (94), Expect = 6e-12 Identities = 232/348 (67%), Gaps = 23/348 (7%) Strand=Plus/Plus Query 119766 TCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAGC-GA 119823 || || | ||| || || || | ||||| | |||| ||||||| ||||| ||| || Sbjct 6113 TCAGCGATAAATTCAATATACTGACACATCAGTTTGC-AATTCAT-CCCAATTAAGCTGA 6170 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACAT--ACT 119881 | |||| || | || || || |||| ||| || ||||| ||| | || ||| Sbjct 6171 CTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACT 6230 Query 119882 CAACACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGACA 119941 |||||| || ||| | ||| ||||| | ||||| |||| | ||||||| Sbjct 6231 CAACACGTT---CTTTGGGAGG-----CTTTTTGATAATATGTTTAA---ACAATAGACA 6279 Query 119942 AGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCC 120001 ||| || || ||||||||||||||||| || | ||| ||||| ||| || || Sbjct 6280 AGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCC 6339 Query 120002 GGGTAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCAGaaaa 120061 || | | ||| |||| || | || | || || ||||| ||||||||||| Sbjct 6340 AGGCATAAGACCTCGTTTC------TTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAA 6393 Query 120062 aaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGT 120109 |||||| ||||| || |||||||| || | |||||| || || || Sbjct 6394 AAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGT 6441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478410689393680