Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3479 93.3 1e-13 seq13135 84.2 6e-11 >seq3479 Length=24095 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||||| || ||||| || | ||||||||||| ||| ||||||| | |||||| || Sbjct 4587 GGAATCGTAGAAGAGCTATTATGGTTTATTCGTGGATCTACAAATTCTCGTGAACTGGCG 4646 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGAT 111461 | |||||||||| | | ||||||| ||||||||| ||||| ||| ||||| Sbjct 4647 GAAAAAAATGTACATTTCTGGGATGCAAATGGATCTCGTGAATTTTTAGAT 4697 >seq13135 Length=7929 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||||||| ||||| | || | ||||||||||| ||||| ||||| || || || || Sbjct 6947 CAGATTGAAACAGGCAATCCATTCATGTTGTACAAGGATTCTTGCAATCGTAAATCAAAT 7006 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||||| || || ||||||| ||||| ||||| || || || |||| || | Sbjct 7007 CACCAGCATCTAGGCACAATTCGTTGCAGCAATCTATGCACGGAAATAGTTGAGTATTCT 7066 Query 364264 GCTCCCGACGAGACTGCCGTATGTAA 364289 | || ||||| || || || ||||| Sbjct 7067 TCACCAGACGAAACAGCTGTCTGTAA 7092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302651080597958