Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq39381 132 3e-26 seq14572 107 1e-18 seq3387 102 5e-17 seq14011 95.1 8e-15 seq41056 89.7 3e-13 >seq39381 Length=633 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 513 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 572 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| ||||| |||||||||||||||||||| Sbjct 573 TAATCCATTCATACGCGTCACTAATTAGATGAC 605 >seq14572 Length=6916 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 6455 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACT 6514 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||||||||| Sbjct 6515 CGTGTAAGTATTTAGCCTT 6533 >seq3387 Length=24534 Score = 102 bits (112), Expect = 5e-17 Identities = 81/96 (84%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||| |||||||||| ||||||||||||||| ||||| || |||||||| Sbjct 14636 AAGCCTGTTCTCTTGGCTGTGACTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 14577 Query 25957 TAAT-CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | |||||| ||||||||||||||||||||| Sbjct 14576 TAATACAATTCATGTGCGTCACTAATTAGATGACGA 14541 >seq14011 Length=7306 Score = 95.1 bits (104), Expect = 8e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 6756 TTGCTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACT 6815 Query 20004 CG 20005 || Sbjct 6816 CG 6817 >seq41056 Length=549 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||| || |||||||||| |||||||| |||||||| || Sbjct 524 TTACTCTCTCTTCAAAGTACTTTTAAATTTTCCCTCACAATACTTGTTTGCTATCGGACT 465 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||||||||| Sbjct 464 CGTGTAAGTATTTAGCCTT 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334775467232339