Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq12381 244 1e-59 seq13135 107 2e-18 >seq12381 Length=8583 Score = 244 bits (270), Expect = 1e-59 Identities = 513/752 (68%), Gaps = 17/752 (2%) Strand=Plus/Plus Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552 || || |||| |||||| ||||| ||||| || |||||||| || || | | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 32611 ||||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 6170 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGA 6228 Query 32612 TCTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 32668 || ||||| | || || | |||| ||||||||||| | ||| ||||| Sbjct 6229 CTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAA 6285 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 ||| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 6286 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 6345 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 || || || || |||||||| ||||| | ||||| |||||||| || | ||||| Sbjct 6346 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTC 6405 Query 32789 TACTGCCGCAAAGGCAA-TAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACT 32844 ||||| ||||| |||| |||| | ||| || || | | ||| ||||| | Sbjct 6406 CACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAAT 6464 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAG 32902 | ||||| | ||||| || ||||||| | ||| || ||| || || ||||| Sbjct 6465 CTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAG 6522 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 | ||| |||| ||| ||||| | ||||||||||| || | | |||||||| || Sbjct 6523 AAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGA 6582 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022 ||||| || || || || || || | ||| ||||| || | | |||| | |||||| || Sbjct 6583 GTGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGAC 6642 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 |||| || || ||||| | || || || || |||||||| || ||||| || Sbjct 6643 TTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAA 6702 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 33142 || || || | ||| |||| ||| | | ||| | ||||| ||| Sbjct 6703 GGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAG 6762 Query 33143 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||||| |||| |||||| |||||||| |||||||| || || | ||||| ||||| | Sbjct 6763 ATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAA 6822 Query 33203 ATTCCAGATGTCATGATATTGAATTGGAAAAA 33234 || ||||| || || |||| || || |||| Sbjct 6823 ATGCCAGACATCGTGGTATTCTATGGGGAAAA 6854 >seq13135 Length=7929 Score = 107 bits (118), Expect = 2e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 ||||||||| || ||||| || || | || ||| | |||| ||||| ||| Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 || ||| || || ||||| || ||||||| || | ||| ||| ||| | |||||| Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 || ||||| ||||||||||| || |||| | | |||||||| || || | || | Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 5827 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 | ||| || || ||||| | || || ||||| || |||||||| |||||||| | Sbjct 5826 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACAT 5767 Query 63520 TAGATTGTACGTCT 63533 || || ||||||| Sbjct 5766 TAAGTTATACGTCT 5753 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 63754 AGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACT 63813 |||| |||||||| || |||||| | ||| ||||||| || | || || Sbjct 4592 AGGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATCTTCAACAACATCTGA 4533 Query 63814 AAA--TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 ||| ||| ||| ||||| |||||||||||||| |||| | | ||| || | |||| Sbjct 4532 AAACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATG 4475 Query 63872 GCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 63930 ||||| || |||||| |||| | || | | || | | |||||||||||| | ||||| Sbjct 4474 GCATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAA 4416 Query 63931 TTCTACCGTTGTTACACCA 63949 |||||| || || || ||| Sbjct 4415 TTCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633298796692400