Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12381 251 8e-62 >seq12381 Length=8583 Score = 251 bits (278), Expect = 8e-62 Identities = 539/797 (68%), Gaps = 20/797 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || ||||| | |||||| || |||||| |||||| | |||||||| || | | | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || ||||| || |||| || || || | || || | ||| || ||| | | ||| Sbjct 6170 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTG-- 6227 Query 93044 ATTACTCTAC----TATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| || | ||||| || |||| | | || || ||| || || || | Sbjct 6228 ---ACTCAACACGTTCTTTGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGA 6284 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||||| |||||||||| || || |||||||| || | | || || | Sbjct 6285 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 6344 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || ||||||||||| ||||| ||||| | ||||| |||||||||||||| | ||||| Sbjct 6345 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTT 6404 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT---TGCGGAATTACTGCTGATCC 93275 |||| |||||||| || || | ||||| |||||| | | |||| | | |||| Sbjct 6405 CCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCA---CCAATCC 6461 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC-GATAGCGTTAAAT 93334 | | ||| ||||| | || ||||| || ||||| || ||| | || ||||| || Sbjct 6462 AATCTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAG 6520 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | || ||| ||||||||||| ||||| | ||| ||||||||| Sbjct 6521 AGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCA 6580 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | |||||| || || || || | ||| |||||||| | | | || | ||||| Sbjct 6581 GAGTGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGG 6640 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||||||| || | || | ||| || || ||| || || || ||| ||||| Sbjct 6641 ACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAG 6700 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || || || | | ||| ||||| || || |||| | ||||||| | || Sbjct 6701 AAGGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAAT-GTAT 6759 Query 93575 -AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 |||||||| || | ||| || ||||| ||||||||||| || ||| | || || || || Sbjct 6760 GAGATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATA 6819 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 | || ||| | || || |||| || || || | ||| || || | ||||| ||| Sbjct 6820 AAAATGCCAGACATCGTGGTATTCTATGGGGAAAAGGACGAAGCGGTGTGGGTTTGGTTT 6879 Query 93694 TAGTAACGGCTCTAGTT 93710 ||||| || ||||||| Sbjct 6880 GAGTAAGGGTTCTAGTT 6896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556567967787560