Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10576 95.1 2e-14 seq7461 93.3 9e-14 seq22634 87.8 4e-12 seq12084 87.8 4e-12 >seq10576 Length=10243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| |||||||||| || |||||||||||||||| Sbjct 9615 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAAACTCATGGTCGTGGGTTCGAG 9674 Query 142563 CCCCACATCGGG 142574 |||||| ||||| Sbjct 9675 CCCCACGTCGGG 9686 >seq7461 Length=14225 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||| Sbjct 6866 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTTAGGGTCGTGAGTTCGA 6925 Query 142562 GCCCCACATCGGGC 142575 ||||||| |||||| Sbjct 6926 GCCCCACGTCGGGC 6939 >seq22634 Length=3048 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||| | Sbjct 555 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGGGGGTTCGGG 496 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 495 CCCCCCATCGGGC 483 >seq12084 Length=8845 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||||||| |||| ||||||||||||| ||||||||| ||||| Sbjct 3255 AGCCCGGCTAGCTCAGTCGGTTGAGCATGAGACTCTTAATCTCAGGGTCGTGGGCTCGAG 3314 Query 142563 CCCCACATCGGGC 142575 |||||| |||||| Sbjct 3315 CCCCACGTCGGGC 3327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027282786650029