Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16281 84.2 2e-11 >seq16281 Length=5832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/120 (79%), Gaps = 8/120 (7%) Strand=Plus/Plus Query 114321 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 114378 ||| || ||| | |||||||| ||||||||||||| || |||||||| | | | | || Sbjct 2178 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACTGTTATCCATGCAGC-GTTTAC 2235 Query 114379 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 |||||||||||| | | ||||| |||||||||||||| ||| | ||| |||| ||||| Sbjct 2236 GATCTAAGGAACGATAGCTGATTTATTGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 2295 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/120 (79%), Gaps = 8/120 (7%) Strand=Plus/Plus Query 115518 AGGCATGCAATGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA 115575 ||| || ||| | |||||||| ||||||||||||| || |||||||| | | | | || Sbjct 2178 AGGGATTCAAGG-CATGTATTAGCTCTAGAATTACTACTGTTATCCATGCAGC-GTTTAC 2235 Query 115576 GATCTAAGGAACCAAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 |||||||||||| | | ||||| |||||||||||||| ||| | ||| |||| ||||| Sbjct 2236 GATCTAAGGAACGATAGCTGATTTATTGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 2295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396858819779338