Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq11941 190 8e-43 seq24713 131 7e-25 seq1712 104 9e-17 seq16733 87.8 7e-12 >seq11941 Length=8966 Score = 190 bits (210), Expect = 8e-43 Identities = 268/373 (72%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || |||||||| || || || || || ||||||| | ||||||||||| || Sbjct 4672 AAGACTTTTGCCCCGGAGGAGATCTCTGCTATGGTGTTAGGGAAAATGAAAGAGTTTGCT 4731 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| |||| |||||| ||||||| |||||||||| |||||||| || Sbjct 4732 GAAGCTTATCTTGGCAAAAAGGTTACTCATGCAGTTGTTACTGTTCCAGCTTATTTTAAC 4791 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410 || ||||| || || ||||| |||||||| || ||| ||||||||||| ||| | || || Sbjct 4792 GACGCACAGCGCCAGGCAACCAAAGATGCTGGTACA-ATTGCTGGTTTGAATATACTCCG 4850 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 |||||||||||||| || || ||||| | || || || |||| | |||||| Sbjct 4851 GATTATTAATGAACCAACTGCTGCTGCAATTGCTTACGGTCTAG-------ATAAGAAAG 4903 Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 | | || ||||||||| | |||||||| |||| ||||| ||| || ||| ||| Sbjct 4904 ATGGTGAGAAAAATATTCTTATATTTGATCTTGGAGGAGGTACTTTCGACGTTTCATTAC 4963 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 || | ||||| | || || || |||||| || ||||||||||| || ||||| || | Sbjct 4964 TTACGATTGAGAACGGAGTGTTCGAAGTAGTTGCTACCAATGGTGACACACATCTTGGTG 5023 Query 451590 GTGAAGATATTGA 451602 | || || |||| Sbjct 5024 GAGAGGACTTTGA 5036 >seq24713 Length=2438 Score = 131 bits (144), Expect = 7e-25 Identities = 271/401 (68%), Gaps = 3/401 (1%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 ||||| ||||| | || | ||| | ||||||| ||||| || ||||| | || || Sbjct 402 TATAAGGGTGAGAAAAAGATGTTTTCCGCTGAAGAGATTTCGTCAATGGTGTTGACGAAG 343 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || || ||| ||| | || | || | ||| || || || || ||| Sbjct 342 ATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTT 283 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || ||||| |||||||| ||||| |||||||| ||||||||||| ||| |||||| Sbjct 282 CCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGT 223 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 | ||||| | |||| ||||| || || ||||| || || | || ||||| | ||| Sbjct 222 CTTAATGTGTTGAGAATAATTAACGAGCCGACAGCTGCGGCAATTGCCTATGG-TTTGGA 164 Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 || || | | || ||| | || |||||||||| ||||| || || | Sbjct 163 CAA--GAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTT 106 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| || | | | ||||| ||||| |||| || || ||| | || ||||||| Sbjct 105 GATGTGTCCATCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTGAT 46 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA 451617 || || | |||||||||||| |||| ||| || ||||| Sbjct 45 ACACACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGA 5 >seq1712 Length=34227 Score = 104 bits (114), Expect = 9e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||||||||||||||| || ||| ||| || | ||| ||||||||| ||||||| Sbjct 17820 ACATGGACAAAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATG 17761 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 ||||| || || |||||| | ||| | |||||||||| ||| |||| ||||||||||| Sbjct 17760 TGAAGGAATTACACCAGATATTATTATTAATCCACATGCTATTCCTAGTCGTATGACTAT 17701 Query 248607 GGGACAATTA 248616 ||||| ||| Sbjct 17700 TGGACATTTA 17691 >seq16733 Length=5584 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 391145 TAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGA 391204 ||| ||||| || || || || ||||||||||||||||| | || |||||||| ||||| Sbjct 3325 TAAAGAAGGCATCCCACCAGACCAACAACGTTTAATTTTTGCTGGCAAACAACTGGAAGA 3266 Query 391205 TGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCA 391252 |||| ||||| | | || || ||||| | ||||| ||||||| || Sbjct 3265 TGGACGAACTCTTTCCGACTACAATATACAGAAGGAATCAACACTCCA 3218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974653469877452