Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq24713 190 2e-42 seq11941 181 8e-40 seq35195 140 2e-27 seq11450 93.3 3e-13 >seq24713 Length=2438 Score = 190 bits (210), Expect = 2e-42 Identities = 462/696 (66%), Gaps = 8/696 (1%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| |||||||||||||||||||| | |||| || | |||| | || | ||| Sbjct 14 CGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAAT 73 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||| |||| | ||| | | |||||| || |||||||||| |||||| || Sbjct 74 ATACCATCCTCAATCGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATC 133 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | ||||| || | || || || | |||||| |||| || ||||| || Sbjct 134 AACACATTACGCTCACCACCAACCTTCTTGTCCAAACCATAGGCAATTGCCGCAGCTGTC 193 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || ||||| |||||||| |||||||||||||| || ||||||||||| || ||| Sbjct 194 GGCTCGTTAATTATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCT 253 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTT 518319 || | ||| || || || || |||||||| || ||||| || ||| | | | || | Sbjct 254 TGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTG 313 Query 518320 ACCAATATAAGCGCTT---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTG 518376 |||| |||| ||| || | ||||| || | || | |||||| ||||| | Sbjct 314 CCCAA-ATAA---CTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTC 369 Query 518377 TTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 518436 ||| | |||| | ||| ||| | ||| || || | | || ||| Sbjct 370 TTCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCACC 429 Query 518437 AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 || | | | || | ||||||||| | |||||||| || || | | |||| || Sbjct 430 GACTTGAGTCACCTCAAATGGCCAATGCTTCATATCACTCTGCACTGATGGATCATCGAA 489 Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTG 518556 | ||| |||| || || |||||||| | ||||| ||||| || || || |||| Sbjct 490 CCGACGACCGATTAGACGCTTCGCATCAAACACTGTATTTGTTGGGTTCATCGCCACTTG 549 Query 518557 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 518616 | || ||| |||| ||||| | | | || | ||||| || | ||||| || || Sbjct 550 GTTCTTCGCTCCATCACCAATTAAACGCTCAGAGTCTGTGAACGCCACATAACTCGGTGT 609 Query 518617 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 518676 || | ||||| || ||||| ||||| || || |||||||||| || | ||||| || Sbjct 610 CGTTCTGTTACCCTGGTCATTGGCAATTATCTCCACTTTACCATGCTGGAAAACACCAAC 669 Query 518677 ACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||| | ||||| || | ||| || ||||| || Sbjct 670 ACACGAGTATGTTGTACCAAGATCGATTCCAATGGC 705 >seq11941 Length=8966 Score = 181 bits (200), Expect = 8e-40 Identities = 385/569 (68%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || || || || | |||||| ||||| | ||| | || |||| | ||||| ||| Sbjct 4946 GTACCTCCTCCAAGATCAAATATAAGAATATTTTTCTCACCATCTT---TCTTATCTAGA 4890 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| |||||||||||||||||||||||||| | | | ||| | ||||||| Sbjct 4889 CCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATATTCAAACCAGCA 4830 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || |||||||| || || || | |||| ||||||||||| || ||||||||| Sbjct 4829 ATTGTACCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAAGCTGGAACAGTA 4770 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | ||| |||| ||| || | ||| |||| |||||| || | ||||||||| | | Sbjct 4769 ACAACTGCATGAGTAACCTTTTTGCCAAGATAAGCTTCAGCAAACTCTTTCATTTTCCCT 4710 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGAT-----ATG 518411 || | ||| | || || | || |||| | | |||| ||| |||| || Sbjct 4709 AACACCATAGCAGAGATCTCCTCCGGGGCAAAAGTCTTGACTTC----TGATCCAACGTG 4654 Query 518412 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATAT 518471 | ||||| | ||| || ||||| ||||| || ||| || | | | || | Sbjct 4653 A-ACTTCGACATACGGCTTATTCTTTTTATTAACGACGGAAAAAGGGAAATGAGTTATGT 4595 Query 518472 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 518531 | || ||| | |||| || | ||| ||||| | || || | || ||||| | Sbjct 4594 CACCCTGTACAGTAGATTCATCGAACTTTCTTCCAATAAGTCTCTTGACGTCGAAAATTG 4535 Query 518532 TATTGGTTGGATT-AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT---CT 518587 | || ||||| || |||| || | ||| || |||||||||||||| | | || Sbjct 4534 TGTTTTCCGGATTCGATGTCAGC-TGGTTTTTAGCAGCATCTCCAATCAGTCGCTCGCCT 4476 Query 518588 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 518647 | || |||| |||||||| ||||| | | ||||| |||||||||||||||||| Sbjct 4475 TCCGGAGTGAATGCCACATATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATT 4416 Query 518648 TCAACTTTACCATTTTGCCATACACCTAC 518676 |||||| || ||| ||||||| || Sbjct 4415 TCAACTCGGCCTCCTTGAAATACACCAAC 4387 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 4894 CTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATATTCAAAC 4835 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| || ||| ||| ||||| || | ||||||||| |||||||| ||||| | Sbjct 4834 CAGCAATTGTACCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAAGCTGGAA 4775 Query 322359 CAGTAATAACTGCTTTATTAA 322379 |||||| |||||| | | ||| Sbjct 4774 CAGTAACAACTGCATGAGTAA 4754 >seq35195 Length=800 Score = 140 bits (154), Expect = 2e-27 Identities = 507/778 (65%), Gaps = 28/778 (4%) Strand=Plus/Plus Query 517291 ATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATT 517350 |||||| || || ||||| ||||| || | ||||||||||||| ||| | | Sbjct 6 ATCAAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTC 65 Query 517351 AAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT 517410 || | || || ||| || || ||||| | | || || |||||||| | ||||| Sbjct 66 GAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCTCGCCCTCGAACACCTGGAT 125 Query 517411 AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGA 517468 | || ||| ||| || ||||| || || || || | | || | | || ||| Sbjct 126 AAGCACACCAGGTTGGTTGTCTGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGA 183 Query 517469 ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGA 517528 ||||| ||||| | | ||| | | ||||| | ||| || || ||||| | ||| || Sbjct 184 ATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAGT 243 Query 517529 GAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAAC 517587 || || |||| || |||| | | | | || | ||| || || | |||| Sbjct 244 GATAGTGGAGCTACGTCAAGCAACAGCAAGTCCTGCACAGCCTCA-CACTTATCACCACT 302 Query 517588 AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTC 517647 ||||||||||| || | ||| |||||||| || ||||||||||| ||||||| || || Sbjct 303 TAGAATAGCTGCCTGCACAGCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTT 362 Query 517648 ATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 517706 || | | ||| || ||||| || | ||| || | || | || ||||| ||||||| Sbjct 363 GTTCAACTCTTTCCCGTTGAAGAAGTCTTGTAACAGCTTCT-GCACTTTAGGGATACGAG 421 Query 517707 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 517766 || || |||||||| || || || || | ||| || || |||| || | ||| || Sbjct 422 TGGAACCACCAACTAACACTATGTCGTGAATCTGGGACTTGTCCATCTTAGCATCTCGTA 481 Query 517767 AAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATT 517826 || | || |||||||| || | | | || | || | | | || || ||| Sbjct 482 AAGCCTTCTCAACGGGATCCAACGTACCACGGAATAGATCGGCATTCAACTCCTCAAATC 541 Query 517827 TAGCTCTAGTAAGAGTGAC---ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 517883 || | ||| | | || | | ||||||| || || |||| || |||| || | Sbjct 542 GTGCACGAGTGA---TCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCA 598 Query 517884 TCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTA 517940 | || || | ||||| || ||| ||||| ||||||||||| |||||||| | Sbjct 599 GATTCGTCTGGGCACTCGAACTCAAT-GTG--CGTTTCGCACGTTCACACGCTGTCCTCA 655 Query 517941 GTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATC 517998 | | || || || ||| |||| | | || | ||| | ||||| ||| ||| || Sbjct 656 GACGACGCAATGC--ACGCTTATTGCTACGGATGTCTTTACTGTATTTCTTCTGGAACTC 713 Query 517999 TTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTAT 518054 || |||| || | || | ||||| |||||||||||||||||||| | |||| Sbjct 714 TT--TCACAAAGTGATCCACCATGCGATTGTCAAAATCTTCACCTCCCAAGTGTGTAT 769 >seq11450 Length=9373 Score = 93.3 bits (102), Expect = 3e-13 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| ||||||||||||| ||| || | ||||| || | |||| | || | ||| Sbjct 311 CGATTGTCAAAATCTTCACTTCCAAAGTGCGTATTACCAGCAGTAGACTTCACCTCGAAT 370 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||| |||| || | | | || |||||| || |||||| ||| ||||| || Sbjct 371 ACACCATCCTCAATAGTCTAGATAGACACATCAAATGTACCACCAACCAAGTCAAATATC 430 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | ||||| ||| || | || || | |||||| | || || | | | || Sbjct 431 AAAACATTACGTTCACCATCAACTATCTTGTCCAAACCATAGGTAATTGCCGAAACTGTC 490 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || ||||| |||||||| |||||||||||| | | |||||||||| || ||| Sbjct 491 GGCTCGTTAATGATTCTCAACACATTAAGACCAACTACAGCACCTGCATCTTGCGTTGCT 550 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 | | ||| || | || || |||||||| | ||||| | |||| Sbjct 551 TCACGTTGACTGTCACTGAAGTAAGCAGGAACTGCTATAACTTCGTCAG 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778734797644714