Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq24713 232 8e-56 seq11941 132 6e-26 seq35602 109 7e-19 >seq24713 Length=2438 Score = 232 bits (256), Expect = 8e-56 Identities = 477/703 (68%), Gaps = 10/703 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||||||||| |||||||||||||| || || || | || || || || ||||| Sbjct 20 TCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACCA 79 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || |||||||| ||||||||||||| ||||| || | || Sbjct 80 TCCTCAATCGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACACA 139 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | ||||| || | ||| || || || ||||| || || || || Sbjct 140 TTACGCTCACCACCAACCTTCTTGTCCAAACCATAGGCAATTGCCGCAGCTGTCGGCTCG 199 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || | || ||| || || ||||| |||| | ||||||||||| ||||| || Sbjct 200 TTAATTATTCTCAACACA-TTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACG 258 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || || ||||| || || ||||||| || ||||| | || || | || | Sbjct 259 TTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTGCCCAA 318 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| ||| || | || ||||| || || | ||||| || |||||||||||||| | Sbjct 319 ATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCTTCAGCGGA 378 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 |||| || | ||||| ||| | ||||| |||| | | || | || | | | Sbjct 379 AAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTT---CCCACCGACTTG 435 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGAAAACTTTC 7934 | |||| | | | ||||| |||||||| || | ||| ||| || ||| | Sbjct 436 AGTCACCTCAAATGGCCAATGCTTCATATC-ACTCTGCACTGATGGATCATCGAACCGAC 494 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| |||||||| |||||||| ||||| ||| | |||||||| || |||||||| Sbjct 495 GACCGATTAGACGCTTCGCATCAAACACTGTATTTGTTGGGTTCATCGCCACTTGGTTCT 554 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 |||| | || || || | ||| || | || || ||||| || || || |||| Sbjct 555 TCGCTCCATCACCAATTAAACGCTC---AGAGTCTGTGAACGCCACATAACTCGGTGTCG 611 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 ||| || || ||||| || ||||| || || || | | || | || || || | Sbjct 612 TTCTGTTACCCTGGTCATTGGCAATTATCTCCACTTTACCATGCTGGAAAACACCAACAC 671 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCAT 8157 |||| || ||||| || | ||| || || || || | || ||| Sbjct 672 ACGAGTATGTTGTACCAAGATCGATTCCAATGGCGTTAGGCAT 714 >seq11941 Length=8966 Score = 132 bits (146), Expect = 6e-26 Identities = 202/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 7532 AACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT 7591 || ||||| || || ||||| || || || ||||| || || | || | || | ||| Sbjct 4961 AATGAAACGTCGAAAGTACCTCCTCCAAGATCAAATATAAGAATATTTTTCTCACCATCT 4902 Query 7592 TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 || |||||| |||||||| || || || || || ||||||||||||||||| || || Sbjct 4901 TT---CTTATCTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGT 4845 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 |||| |||||||| || | |||||||| || || || || || | |||||||| Sbjct 4844 ATATTCAAACCAGCAATTGTACCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAA 4785 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 || || || || || || || || | || || || || || ||||| | ||| || | Sbjct 4784 TAAGCTGGAACAGTAACAACTGCATGAGTAACCTTTTTGCCAAGATAAGCTTCAGCAAAC 4725 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 ||||||||||| | ||||| | || ||||| || | ||||| Sbjct 4724 TCTTTCATTTTCCCTAACACCATAGCAGAGATCTCCTCCGGGGCAAA 4678 >seq35602 Length=773 Score = 109 bits (120), Expect = 7e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| ||||| ||| | || ||||| |||||||| |||||| ||||| || ||||| Sbjct 545 CTTCTCATCCTCAGCCTTGTACTTGTCCGCATCGGCTACCATCCGCTCAATCTCCTCTTT 604 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTAT 6683 ||| || | ||||||||||| || ||||| ||||| ||| | || || | |||| | Sbjct 605 CGACAAACGACCCTTATCATTTGTGATCGTTATCTTGTTCTG-CTTCCCGGTACCCTTGT 663 Query 6684 CTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTG 6743 | ||||| ||| |||| |||||| || || || | ||| ||| | || | ||| || | Sbjct 664 CAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATCTGAG 723 Query 6744 GTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAG 6792 | ||||| | || || | ||| ||||| | | || || ||||||| Sbjct 724 GAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTACCAAG 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634798807477960