Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq1712 123 3e-23 >seq1712 Length=34227 Score = 123 bits (136), Expect = 3e-23 Identities = 197/283 (70%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 126900 GAAACAATGTATTGTGGTTTTACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCA 126959 |||| |||||| ||| ||||||||||||| |||| ||||||| |||| ||| Sbjct 16394 GAAATTATGTATAATGGATTTACTGGAAGAAAATTAAATTCACAAATTTTCTTAGGACCA 16335 Query 126960 ACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGT 127019 || || ||||| ||| | |||||||||||| | |||||||| ||| | | | ||| Sbjct 16334 ACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCACGTGGA 16275 Query 127020 CAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGA 127079 | ||| || | | |||||||||| | |||||| | | |||||| || | Sbjct 16274 CCTGTACAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCTACGT 16215 Query 127080 TTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAA 127139 ||||| ||||||||| |||||| | | |||||| || ||||||||||| |||| Sbjct 16214 TTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACGTGAA 16155 Query 127140 AGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGTGTGTA 127182 | | ||||| | ||||| | |||| || ||||||||| Sbjct 16154 CGTTTATTTTTTGCTAGTGATCCATATCAAGTTTATGTGTGTA 16112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658056970447240