Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12381 288 1e-72 seq13135 109 6e-19 seq14703 100 3e-16 >seq12381 Length=8583 Score = 288 bits (318), Expect = 1e-72 Identities = 519/754 (69%), Gaps = 10/754 (1%) Strand=Plus/Plus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 ||||| || || || | ||||| |||||| ||||| | |||||||| || ||| Sbjct 6104 AGTAGCCTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATT 6163 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 || | || ||||| || || | | ||| || |||||||| || |||||| ||| Sbjct 6164 AAGCTGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATT 6223 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTAT---AGAAGATGTTTAAACATCAAACAT 18963 || || |||| | |||| | ||||| | | | || ||||||||||| | ||| Sbjct 6224 ATTGACTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAA 6280 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 || ||||||||||||||||| ||||||||||| || |||||||| ||| | | ||| Sbjct 6281 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 6340 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||| || |||| ||| || | ||||||||||| ||||| |||||||| || | | Sbjct 6341 GGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACA 6400 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| ||||||||||||||||||| | |||| || || ||| | | || | |||| Sbjct 6401 CCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATC 6460 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA--TTGTCTCTATAGAATTAA 19201 || | | |||||| | |||||| || ||||| | | ||| || ||| | || | Sbjct 6461 CAATCTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTG-CT-TATGGCGTTGA 6518 Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 | ||| | | || | | ||||| | |||| ||| || |||||| |||||||| Sbjct 6519 AGAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTT 6578 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || |||||||| || ||||| ||||| | ||| || ||||| | | |||| |||| Sbjct 6579 CAGAGTGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCT 6638 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 | ||||| || || | ||| | | || || || || || ||||| || |||| Sbjct 6639 GGACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAA 6698 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCAT 19441 | || ||||| || | || ||||| ||| | |||| | | ||||| Sbjct 6699 AGAAGGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTA 6758 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | | |||||| |||||||| || ||||| || ||||||||||| || | || || |||| Sbjct 6759 TGAGATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTAT 6818 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAA 19535 | | | ||| | ||| | |||| ||| || || Sbjct 6819 AAAAATGCCAGACATCGTGGTATTCTATGGGGAA 6852 >seq13135 Length=7929 Score = 109 bits (120), Expect = 6e-19 Identities = 176/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 ||||||||||||| ||||| ||||| | || || | |||| | | || ||| Sbjct 6007 CAATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTAT 5948 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || | || ||||| || || |||||||||| | ||||| ||| || |||| Sbjct 5947 GAACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTAT 5888 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | ||||| |||||||||||||| ||| ||||| | | ||||||||||| || | || | Sbjct 5887 CGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTG 5828 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | | ||| || | ||||| | ||| || || ||||| ||||||| || || || | Sbjct 5827 GTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACA 5768 Query 48652 ACAATTTATATGT 48664 || ||||| || Sbjct 5767 TTAAGTTATACGT 5755 >seq14703 Length=6826 Score = 100 bits (110), Expect = 3e-16 Identities = 258/386 (67%), Gaps = 9/386 (2%) Strand=Plus/Minus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| ||||||||||||||| |||| ||| ||| | |||| | | ||| | Sbjct 823 CTCCAAGTATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGAGCGAGATGTAGG 764 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 |||||||| || ||||| |||||||||| | | | | || |||||||| | ||| | Sbjct 763 TTAAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTC 704 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG-- 47226 |||||| |||||||||||||| || || | |||| | || | | ||| | | Sbjct 703 TTTTGTGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCT-TAGGAATTCCGTC 645 Query 47227 --TATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaa 47283 ||| ||||||||| || | | || | | | | |||||| ||| | ||||| | Sbjct 644 GATATGTTGAATAGAACC-CTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACA 586 Query 47284 gttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGAT 47342 | || || ||| | | || ||||| || || ||||| || ||||| ||| Sbjct 585 ACCCTAATTTAG-TAAGATCATCAAGAAGATATGGGTTCACAATCTGGAATTCACCACTC 527 Query 47343 AGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAA 47402 | || | || | ||| || ||||| | ||||| | || ||||| || |||| | Sbjct 526 AACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATTGTTCCCAAGA 467 Query 47403 ATTTGAGCAGTTGATGCTGTAGGCAT 47428 || |||| ||||||||||| ||||| Sbjct 466 ATCTGAGATGTTGATGCTGTTGGCAT 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561813208061160