Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11941 178 1e-38 seq24713 172 4e-37 seq6676 95.1 1e-13 seq3772 95.1 1e-13 seq1712 93.3 3e-13 >seq11941 Length=8966 Score = 178 bits (196), Expect = 1e-38 Identities = 379/560 (68%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 550028 GTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACT 550087 |||||||| | ||| || ||||||||||||||| |||||||| |||||||| | | Sbjct 4387 GTTGGTGTATTTCAAGGAGGCCGAGTTGAAATTATTGCGAATGATCAGGGTAACAGGATT 4446 Query 550088 ACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 ||||| || ||||| | ||||| |||| || | | |||| ||||| || ||| Sbjct 4447 ACTCCCTCATATGTGGCATTCACTCCGGAAGGCGAGCGACTGATTGGAGATGCTGCTAAA 4506 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 | || || ||||| || || ||||| || | || | | ||||||||| Sbjct 4507 AACCAGCTGACATCGAATCCGGAAAACACAATTTTCGACGTCAAGAGACTTATTGGAAGA 4566 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAAT 550264 | || |||| || ||||| |||| || || | |||| ||||| | |||||| Sbjct 4567 AAGTTCGATGAATCTACTGTACAGGGTGACATAACTCATTTCCCTTTTTCCGTCGTTAAT 4626 Query 550265 GTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT-CA 550321 || || ||| | |||| | || | ||||| | | || | |||| | Sbjct 4627 AAAAAGAATAAGCCGTATGTCGAAGTT---CACGTTGGATCAGAAGTCAAGACTTTTGCC 4683 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || || | || || ||||||| ||| |||||||||| | || |||| | || Sbjct 4684 CCGGAGGAGATCTCTGCTATGGTGTTAGGGAAAATGAAAGAGTTTGCTGAAGCTTATCTT 4743 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || || | ||||| ||||||| | ||||| ||||| |||||||| ||| |||| || Sbjct 4744 GGCAAAAAGGTTACTCATGCAGTTGTTACTGTTCCAGCTTATTTTAACGACGCACAGCGC 4803 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 || || || ||||||||||| |||||||| | ||| | || || ||||| |||||| Sbjct 4804 CAGGCAACCAAAGATGCTGGTACAATTGCTGGTTTGAATATACTCCGGATTATTAATGAA 4863 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTA 550561 || |||||||||||| |||| || || || ||||| | ||| | |||| ||| | Sbjct 4864 CCAACTGCTGCTGCAATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--AAATATT 4920 Query 550562 CTCATCTTTGATTGTGGAGG 550581 || || |||||| |||||| Sbjct 4921 CTTATATTTGATCTTGGAGG 4940 >seq24713 Length=2438 Score = 172 bits (190), Expect = 4e-37 Identities = 400/597 (67%), Gaps = 7/597 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || ||||| ||||||||||||| || |||||||| Sbjct 705 GCCATTGGAATCGATCTTGGTACAACATACTCGTGTGTTGGTGTTTTCCAGCATGGTAAA 646 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| || ||||||||||| || || |||||| | ||||| Sbjct 645 GTGGAGATAATTGCCAATGACCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 586 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||| | |||| ||||||||| ||| || | |||| | || || || ||| Sbjct 585 GACTCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAAT 526 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || ||| |||| || | | || ||||| | | || ||| Sbjct 525 ACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGT 466 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| || | | | | || ||| || | | ||| | | Sbjct 465 GATATGAAGCATTGGCCATTTGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTT 406 Query 550292 ACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || |||| | | ||| | ||||| | ||| | ||||| || ||||| || | Sbjct 405 GAGTAT-AAGGGTGAGAAAAAGATGTTTTCCGCTGAAGAGATTTCGTCAATGGTGTTGAC 347 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 ||| ||||| | | | | || |||| || || || | || || || |||| Sbjct 346 GAAGATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAA 288 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||| ||||||||||| || |||||||| || ||| | Sbjct 287 CGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAG 228 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | | || || || || || || ||||| ||| |||| ||||| Sbjct 227 CTGGTCTTAATGTGTTGAGAATAATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTT 168 Query 550530 TTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 | || || | || | || | |||||| | || ||||||| |||| |||| Sbjct 167 TGGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 111 >seq6676 Length=15566 Score = 95.1 bits (104), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 368836 CAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCT 368895 || ||||||||||||||||| || |||| | || | | | ||| || || Sbjct 3050 CAGATACATTATCCATTTGAGAATACAAA----TGTGTT--TCAAGAAGGTTTCCCAGCA 2997 Query 368896 GATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTA 368955 ||||| | | ||| ||||||||||||||||||||||||||||| |||| |||||| Sbjct 2996 GATTTCATCGCTGAAGGTATTGATCAAACACGTGGTTGGTTTTATACATTATTGGTATTA 2937 Query 368956 TCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTT 369012 ||||| || | |||||| ||||| | ||| ||| |||| || | ||| || ||| Sbjct 2936 TCCACTGCATTATTCGATCAACCGCCATTTCGTAATTTAATTGTTAATGGAATAGTT 2880 >seq3772 Length=22958 Score = 95.1 bits (104), Expect = 1e-13 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 393937 AAAATTAGCTCCTGGATATACACGACGTCCATTTTTTACTAATTGTGTTAAATATTCAAT 393996 ||| ||||| || ||||| | | |||||| | ||||| | | ||||| || || Sbjct 15651 AAACTTAGCACCAGGATAGA---GGGTTCCATTCTGTACTAGCTTTTGTAAATGATCTAT 15707 Query 393997 GTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGTAGTCC 394056 |||| || || || || ||| | | |||| |||| || || || |||| | || Sbjct 15708 GTTAAATTGAGTAACTATCTCAGGATAAGTTAGATTCTGAGCTATTGTTCGTGGGACGCC 15767 Query 394057 CACTTCATTAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATATCCAC 394116 ||||| || | | || || ||||| | || ||||| |||||| |||| | || || Sbjct 15768 CACTTGATCTAAATTAAGGTTGGGATCGGCTGTGATAACAGTACGAGCTGAGAAGTCAAC 15827 Query 394117 ACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTTACCT 394159 |||||||||||||||||| || ||||| | || |||||||| Sbjct 15828 ACGTTTTCCCATAAGATTACCTCGAATACGGCCAGCTTTACCT 15870 >seq1712 Length=34227 Score = 93.3 bits (102), Expect = 3e-13 Identities = 125/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 344465 TACCTAGTAAACATTCAATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGAT 344524 ||||| |||||||||||||||| || || || |||||||| | || ||| || |||| Sbjct 17673 TACCT-GTAAACATTCAATTAAATGTCCAATAGTCATACGACTAGGAATAGCATGTGGAT 17731 Query 344525 TAATAATAATATCAGGAATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTT 344584 ||||||||||||| || | | |||| ||||||||| | |||| | || || Sbjct 17732 TAATAATAATATCTGGTGTAATTCCTTCACATGTGAATGGCATATCTTCTTGACGATAAC 17791 Query 344585 TAAATCCAACTGTTCCTTTTTGTCCAGCTCTTGATGAGAATTTATCACCTACT 344637 || |||| || |||||||||||| || | |||||||||||| ||| Sbjct 17792 GAATTCCACAAGTACCTTTTTGTCCATGTCGACTAGCGAATTTATCACCAACT 17844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027071201548810