Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq12381 264 1e-65 >seq12381 Length=8583 Score = 264 bits (292), Expect = 1e-65 Identities = 574/854 (67%), Gaps = 50/854 (6%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| |||||||| | || || || || ||||| ||||| | |||||| ||||| Sbjct 5953 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCGATTGATATGTTTTC 6012 Query 36947 CATAAAATCAAATGGATTA-------GATGTAT-TA-------------TATATAGTAC- 36984 ||| || ||||| ||||| ||| || || || |||| | Sbjct 6013 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 6072 Query 36985 --TACA-------TGATAA-----TTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTA 37030 |||| | |||| ||| ||| ||||| || || | |||||| || || Sbjct 6073 TTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATATA 6132 Query 37031 TTTACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAA 37090 | |||||| |||| | || || ||||||| | ||||| | || || | | ||| Sbjct 6133 CTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTC--GGATAAA 6190 Query 37091 TAGT--TTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGG 37148 | | | |||||| | || || ||| | | ||| ||| | ||||| | || Sbjct 6191 AACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTCAACACGTTCTT---TGGGA 6247 Query 37149 GGATATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCT 37205 || | ||| | ||||| |||||||||| ||| || ||||||||||||| ||||| ||| Sbjct 6248 GGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCT 6307 Query 37206 CTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAA 37265 ||||| || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| Sbjct 6308 CTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAG 6367 Query 37266 AATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGA 37325 ||||| |||||||| |||||||| || | |||||| ||||||||||| || || | Sbjct 6368 AATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAG 6427 Query 37326 CGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT 37385 ||| | ||||| || || ||||| |||||| | | || ||| | |||||| Sbjct 6428 CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTA 6487 Query 37386 TTAACACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTG 37443 |||||| || | ||| || || || || |||||||||| |||||| | ||| Sbjct 6488 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTT 6545 Query 37444 TTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCT 37503 | || || |||||||||| |||| |||||||||||||||||||| || |||||||||| Sbjct 6546 TGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCT 6605 Query 37504 GAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTA 37563 | | ||||| ||||| | | | || | | || || || | | || | | | Sbjct 6606 GCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAGGA 6665 Query 37564 AGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 ||| || || || || ||||| || |||||||| || | || || ||| |||| Sbjct 6666 GGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATATGAAAT 6725 Query 37624 GTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCAT 37683 | | ||| || | ||| | ||||| | | |||||| |||||||| || || | Sbjct 6726 GACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCACCTCTT 6785 Query 37684 CAACGGTCCAAAAA 37697 | || ||||||||| Sbjct 6786 CCACAGTCCAAAAA 6799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592005322806760