Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq11941 215 3e-50 seq24713 179 2e-39 seq6676 86.0 4e-11 >seq11941 Length=8966 Score = 215 bits (238), Expect = 3e-50 Identities = 379/540 (70%), Gaps = 18/540 (3%) Strand=Plus/Plus Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| ||||| ||||| || ||||| || | || || |||||||| | || || Sbjct 4410 AGTTGAAATTATTGCGAATGATCAGGGTAACAGGATTACTCCCTCATATGTGGCATTCAC 4469 Query 474448 T---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTG 474503 | ||| || | || |||||||||||||||||| | || |||| |||| ||||| | Sbjct 4470 TCCGGAAGGCGAGCGACTGATTGGAGATGCTGCTAAAAACCA-GCTGACATCGAATCCGG 4528 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || ||||| || | || ||| | ||||| | || || ||||| | ||||| | Sbjct 4529 AAAACACAATTTTCGACGTCAAGAGACTTATTGGAAGAAAGTTCGATGAATCTACTGTAC 4588 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | ||| || ||||| |||||| || | ||| ||| || ||| | | Sbjct 4589 AGGGTGACATAACTCATTTCCCTTTTTCCGTCGTTAATAAAAAGAATAAGCCGTATGTCG 4648 Query 474624 AAGCAATACACGCAGG-TGA-AACTAAACAATTTT-CACCGGAACAAATTTCTTCAATGG 474680 ||| | |||| || | | || | || | |||| | ||||| | || ||| | |||| Sbjct 4649 AAG---TTCACGTTGGATCAGAAGTCAAGACTTTTGCCCCGGAGGAGATCTCTGCTATGG 4705 Query 474681 TTTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 | |||| ||||||||| | || |||| |||||||| || | || ||| |||| Sbjct 4706 TGTTAGGGAAAATGAAAGAGTTTGCTGAAGCT--TATCTTGGCAAAAAGGTTACTCATGC 4763 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||| ||||||||||||| |||||||| || | || || || ||||| |||||||| || Sbjct 4764 AGTTGTTACTGTTCCAGCTTATTTTAACGACGCACAGCGCCAGGCAACCAAAGATGCTGG 4823 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | |||||| ||| | ||| | | || ||||||||||||||||| || || ||| |||| Sbjct 4824 TACAATTGCTGGTTTGAATATACTCCGGATTATTAATGAACCAACTGCTGCTGCAATTGC 4883 Query 474859 TTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||| ||||| |||||||| || |||| |||| || | || |||||| |||||| Sbjct 4884 TTACGGTCTAGATAAGAAAGATG-GTGAGAA--AAATATTCTTATATTTGATCTTGGAGG 4940 >seq24713 Length=2438 Score = 179 bits (198), Expect = 2e-39 Identities = 376/555 (68%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || ||| | || || || ||| ||||| | ||||| || |||||||| Sbjct 705 GCCATTGGAATCGATCTTGGTACAACATACTCGTGTGTTGGTGTTTTCCAGCATGGTAAA 646 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || ||||||||||||||||| ||||| ||||| ||||| ||||| | || || Sbjct 645 GTGGAGATAATTGCCAATGACCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 586 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || |||| | | | ||||| |||| || || | |||| || || || ||| Sbjct 585 GACTCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAAT 526 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | | || |||||| || |||||| | | || || | Sbjct 525 ACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGT 466 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAAC--CATATATAGAAG 474626 |||||| |||||||| ||| |||||| | || ||||| || | | || | Sbjct 465 GATATGAAGCATTGGCCATTTGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTT 406 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | || | | ||||| | || ||||| | ||| | ||||| |||||||| || Sbjct 405 GAGTATAAG--GGTGAGAAAAAGATGTTTTCCGCTGAAGAGATTTCGTCAATGGTGTTGA 348 Query 474687 CCAAAATGAAACAAACCGCGAGCTCA----TATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | || ||||| | | ||| | ||| |||| || || || | ||| || || Sbjct 347 CGAAGATGAAGGA----GGTTGCTGAAAGTTAT-TTGGGCAGGACGGTGAGTGACGCTGT 293 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| ||||||||||||||| |||||||| || Sbjct 292 TATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGC 233 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || ||||||||||| || | || ||||| || || ||||| || ||| |||| || Sbjct 232 TATAGCTGGTCTTAATGTGTTGAGAATAATTAACGAGCCGACAGCTGCGGCAATTGCCTA 173 Query 474862 TGGTCTTGATAAGAA 474876 |||| | || ||||| Sbjct 172 TGGTTTGGACAAGAA 158 >seq6676 Length=15566 Score = 86.0 bits (94), Expect = 4e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 297085 TTTGATAATTGGTTACAATCTTCAGTGGATTGGTGTATTTCAAGAAGTAGATATTGGGGA 297144 |||| ||||||||||| | || |||||| | | || |||| | | | ||||| Sbjct 4975 TTTGCTAATTGGTTACGTGATGCACGTGATTGGGCTGTGTCTAGAAATCGTTTCTGGGGT 4916 Query 297145 ACACCAATTCCAATTTGGAAATCTGATGATGGTGAAGAAATAATTTGTATTGGTTCACTT 297204 |||||||| ||||| |||| | ||||||| |||||| | ||||||||||||| || Sbjct 4915 ACACCAATACCAATATGGACAAGTGATGATATGGAAGAAGTGGTTTGTATTGGTTCTATT 4856 Query 297205 GAAGAATTAAAA 297216 |||||||| ||| Sbjct 4855 GAAGAATTGAAA 4844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266374656471212