Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6243 114 1e-20 >seq6243 Length=16394 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 139259 TAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTG 139318 || ||| |||| ||||||||| | |||||||| ||| |||||| || || | |||||| Sbjct 5578 TAATCCTTCTGGACCATGATAAACAGCATAGAAAGCAGCCATATTAGCAAGTAATGCTTG 5519 Query 139319 TGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAG 139378 ||||||||||||||||| || ||||| ||||| | ||||||||| || | ||||||| Sbjct 5518 GGCTGTGCAGATGTTACTTGTGGCTTTATCTCTACGAATATGCTGTTCCCGTGTTTGTAA 5459 Query 139379 TGCTAATCTGTATGCAGG 139396 || | || || ||||| Sbjct 5458 GGCAAGCCTATACGCAGG 5441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578693926453880