Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq24713 318 8e-82 seq35195 271 1e-67 seq11941 172 7e-38 seq24371 134 2e-26 seq11450 132 6e-26 seq16733 102 1e-16 seq35602 98.7 1e-15 seq40567 84.2 3e-11 seq13135 84.2 3e-11 >seq24713 Length=2438 Score = 318 bits (352), Expect = 8e-82 Identities = 492/699 (70%), Gaps = 5/699 (1%) Strand=Plus/Minus Query 195290 ATGTCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAA 195349 ||| || | || ||||| |||||| | || || || ||||| ||||||||||| | || Sbjct 714 ATGCCTAACGCCATTGGAATCGATCTTGGTACAACATACTCGTGTGTTGGTGTTTTCCAG 655 Query 195350 AATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTT 195409 ||| | || ||||| || | |||||||| || ||| | || || || || || Sbjct 654 CATGGTAAAGTGGAGATAATTGCCAATGACCAGGGTAACAGAACGACACCGAGTTATGTG 595 Query 195410 GCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAAC 195469 || || ||||| ||| ||| | |||| |||| || || || || || |||||| Sbjct 594 GCGTTCACAGACTCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAAC 535 Query 195470 CCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAA 195529 || | ||||| || ||||| ||||||||||| || ||||| ||| ||| | Sbjct 534 CCAACAAATACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCA 475 Query 195530 GTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCT 195589 || || ||||| ||| | ||| | | ||| || || | | | || |||| Sbjct 474 GTGCAGAGTGATATGAAGCATTGGCCATTTGAGGTGACTCAAG---TCGGTGGGAAGCTG 418 Query 195590 ATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCT 195649 | |||| |||||| | | | |||||||| || ||| | | ||||| |||||||| Sbjct 417 AAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTCCGCTGAAGAGATTTCGTCA 358 Query 195650 ATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGAT 195709 |||||||||| |||||||||||| ||| ||| || |||| | || |||| || Sbjct 357 ATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGAC 298 Query 195710 GCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCT 195769 || ||| | || || ||||||||||||| ||| ||||| || || || || || || Sbjct 297 GCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCA 238 Query 195770 GCTGCTATTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAAT 195828 | |||||| || ||||| || ||| || ||||| || || || || ||||| || ||||| Sbjct 237 GGTGCTATAGCTGGTCTTAA-TGTGTTGAGAATAATTAACGAGCCGACAGCTGCGGCAAT 179 Query 195829 TGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 ||| |||||| |||||||||| | | || ||||| ||||| |||||| | || Sbjct 178 TGCCTATGGTTTGGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGG 119 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 ||||||||| |||||||| || | | | ||||| | |||||||||||| || ||| | Sbjct 118 TGGTGGTACATTTGATGTGTCCATCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTC 59 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||||||||||| || | || ||||||||||| || Sbjct 58 TACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGA 20 >seq35195 Length=800 Score = 271 bits (300), Expect = 1e-67 Identities = 553/810 (68%), Gaps = 20/810 (2%) Strand=Plus/Minus Query 195929 GGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 ||||||||||| || ||| |||||||||||||||| || | || ||||||||||| || Sbjct 800 GGTATATTCGAGGTGAAGTCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGAC 741 Query 195989 GCACGTCTTCTCCGTCATTTGTCTGAT-GAGTTCCGTCGAAAGAATA-AG-AAAGATATT 196045 || | | ||| || | ||| ||||||| ||| |||| || ||||| || Sbjct 740 AATCGCATGGTGGATCACTT-TGTGAAAGAGTTCCA--GAAGAAATACAGTAAAGACATC 684 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 | | ||| | || | ||||| || ||||| || ||||||||||| ||||| || Sbjct 683 CGTAGCAATAAGCGTGCATTGCGTCGTCTGAGGACAGCGTGTGAACGTGCGAAACGCACA 624 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 | ||| | || || || | | |||||||| ||||||| ||| || ||||| || Sbjct 623 TTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGTTGTGTGATGGTATTGATTTT 564 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT---TAGGAAG 196222 || || || || |||||||| ||||| ||||| || | ||| | || | | | | Sbjct 563 TACACGGTGATCACTCGTGCACGATTTGAGGAGTTGAATGCCGATCTATTCCGTGGTACG 504 Query 196223 TGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGAT 196282 | |||| || ||||| | | | || || || |||||||| ||||| || || | Sbjct 503 T---TGGATCCCGTTGAGAAGGCTTTACGAGATGCTAAGATGGACAAGTCCCAGATTCAC 447 Query 196283 GAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG- 196341 || || || | || || || || || ||||| || || | || || || || | || Sbjct 446 GACATAGTGTTAGTTGGTGGTTCCACTCGTATCCCTAAAGTGCAGAAGCTG-TTACAAGA 388 Query 196342 CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGG 196401 ||||||||| ||||| || |||||| | || || ||||||||||| || |||||||| Sbjct 387 CTTCTTCAACGGGAAAGAGTTGAACAAATCTATTAATCCGGATGAAGCTGTGGCTTATGG 328 Query 196402 TGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACG---TCCAAGATCT 196458 ||| || || ||||| |||||||| | ||| ||| || | | | | || || | Sbjct 327 TGCAGCTGTGCAGGCAGCTATTCT---AAGTGGTGATAAGTGTGAGGCTGTGCAGGACTT 271 Query 196459 TCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGAC 196518 ||| | ||||| || || || |||| |||||||||||||| || || ||||| ||||| Sbjct 270 GCTGTTGCTTGACGTAGCTCCACTATCACTGGGTCTTGAAACGGCTGGAGGTGTGATGAC 211 Query 196519 TAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTA 196578 | ||| | | ||||| || |||||||| ||| || ||| || | ||||| Sbjct 210 GGCTTTGATTAAGCGTAACACGACAATTCCGACGAAGCAGACTCAAACGTTCACGACGTA 151 Query 196579 TTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAA 196638 || || || ||||| ||||| | ||| || || | || || || || | | | || Sbjct 150 CTCAGACAACCAACCTGGTGTGCTTATCCAGGTGTTCGAGGGCGAGCGTGCACTGACTAA 91 Query 196639 GGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGT 196698 ||| ||| |||| ||||| | ||||| | | || || ||| |||| || | ||| Sbjct 90 GGACAACAATCTGCTTGGTAAGTTCGAACTCTCAGGTATCCCACCTGCTCCTCGTGGTAC 31 Query 196699 TCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| |||||| | || || |||||||| Sbjct 30 TCCTCAGATTGAGGTGACGTTTGATATAGA 1 >seq11941 Length=8966 Score = 172 bits (190), Expect = 7e-38 Identities = 290/418 (69%), Gaps = 9/418 (2%) Strand=Plus/Plus Query 195597 ATGTTGAATTTCACGGTG----AGAAGAAACAA--TTTGCTCCCGAAGAAATTTCGTCTA 195650 |||| ||| |||||| || ||||| | | ||||| || || || || || ||| Sbjct 4643 ATGTCGAAGTTCACGTTGGATCAGAAGTCAAGACTTTTGCCCCGGAGGAGATCTCTGCTA 4702 Query 195651 TGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATG 195710 ||||||| || ||||| ||| ||| ||| ||| | || |||| || | ||| Sbjct 4703 TGGTGTTAGGGAAAATGAAAGAGTTTGCTGAAGCTTATCTTGGCAAAAAGGTTACTCATG 4762 Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 ||||||| ||||| || ||||| || | || |||| || ||||| || || || |||| Sbjct 4763 CAGTTGTTACTGTTCCAGCTTATTTTAACGACGCACAGCGCCAGGCAACCAAAGATGCTG 4822 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | | ||||| ||| | || || | ||||| ||||||||||| || |||||||||| Sbjct 4823 GTACAATTGCTGGTTTGAATATACTCCGGATTATTAATGAACCAACTGCTGCTGCAATTG 4882 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 |||| ||||| || ||| || || | || |||||| | | || |||||||| || | Sbjct 4883 CTTACGGTCTAGATAAG---AAAGATGGTGAGAAAAATATTCTTATATTTGATCTTGGAG 4939 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | ||||| || || || ||| | || | ||||| || | ||||||||| |||| Sbjct 4940 GAGGTACTTTCGACGTTTCATTACTTACGATTGAGAACGGAGTGTTCGAAGTAGTTGCTA 4999 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTT 196008 | |||||| || ||||| ||||| || || || || |||| || | |||||| Sbjct 5000 CCAATGGTGACACACATCTTGGTGGAGAGGACTTTGACCAACGTGTTATTGATCATTT 5057 >seq24371 Length=2529 Score = 134 bits (148), Expect = 2e-26 Identities = 354/539 (66%), Gaps = 6/539 (1%) Strand=Plus/Minus Query 196341 GCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATG 196400 ||| |||||| || || || |||||| | | || ||| ||||||| |||||||||| Sbjct 1633 GCTCCTTCAACGGGAAGGAGTTGAACAAATCTACTAATCCGAATGAAGCTGTTGCTTATG 1574 Query 196401 GTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACG---TCCAAGATC 196457 | | || || || || |||| || | || |||||| | | | | || || Sbjct 1573 GAACAGCTGTGCAAGCAACTATCCT---AAGTAGTGACAAGTGTGAGGCTGTGCAGGACG 1517 Query 196458 TTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGA 196517 | ||| | |||| | || || |||| |||||||||| ||| | || ||||| |||| Sbjct 1516 TGCTGTTGCTTGGCGCAGCTCCACTATCACTGGGTCTTGGAACGACTGGAGGTGTGATGA 1457 Query 196518 CTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGT 196577 | | | | | | ||||| | || ||||| ||| || ||| || | |||| Sbjct 1456 CGGCTTTGAGTAAGCGTAACACGGCAATACCGACGAAGCAGACTCAAACGTTCACGACGT 1397 Query 196578 ATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAA 196637 | || || || ||||| ||||| | ||| || || | || || || | | | | | Sbjct 1396 ACTCGGACAACCAACCTGGTGTGCTTATCCAGGTGTTCGAGGGTGAGTGTGCGCTGACTA 1337 Query 196638 AGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTG 196697 |||| ||| ||| ||||| | || || | | || || ||| ||| || | ||| Sbjct 1336 AGGACAACAGTCTGCTTGGCAAGTTTGAACTCTCAGGTATCCCACTTGCTCCTTGTGGTA 1277 Query 196698 TTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTG 196757 ||| |||||| | || || ||| |||||| ||| || ||||| ||||| | |||| Sbjct 1276 CTCCCCAGATTGAGGTGATGTTTGATGTAGACGTAAACGGTATTCTGAACGTATCTGCTG 1217 Query 196758 AGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTT 196817 ||||||| | |||| || | | ||||| ||| || ||||||||||| || | Sbjct 1216 TTGACAAGGGTACTGGGAAGTAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGA 1157 Query 196818 CTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 | ||| ||| | ||| | ||||| |||||||| ||||||| || || || ||| Sbjct 1156 CAAAGCGGGAGAGTGAGAGGATGGTAGCTGATGCGGACAAGTACAAGGCTGAGGATGAG 1098 >seq11450 Length=9373 Score = 132 bits (146), Expect = 6e-26 Identities = 191/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||||||||||||||| ||||| | || || | || || | |||| | | Sbjct 582 GTTCCTGCTTACTTCAGTGACAGTCAACGTGAAGCAACGCAAGATGCAGGTGCTGTAGTT 523 Query 195782 GGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 ||||| || ||| || ||||| || || || || |||| | |||||| | |||||| | Sbjct 522 GGTCTTAA-TGTGTTGAGAATCATTAACGAGCCGACAGTTTCGGCAATTACCTATGGTTT 464 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||||| || | || ||||| ||||| ||||| | | ||||||||| || Sbjct 463 GGACAAGATAGTTGATGGTGAACGTAATGTTTTGATATTTGACTTGGTTGGTGGTACATT 404 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || | | |||||| | |||| ||||||| || ||| ||||||||||| | Sbjct 403 TGATGTGTCTATCTAGACTATTGAGGATGGTGTATTCGAGGTGAAGTCTACTGCTGGTAA 344 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 ||| || | || |||||||||| || Sbjct 343 TACGCACTTTGGAAGTGAAGATTTTGA 317 >seq16733 Length=5584 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171957 TAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGA 172016 ||| |||||||| ||||| || || ||||| | ||||||||||| ||||| || ||||| Sbjct 3325 TAAAGAAGGCATCCCACCAGACCAACAACGTTTAATTTTTGCTGGCAAACAACTGGAAGA 3266 Query 172017 TGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAG 172076 |||||| || || | || ||||| | || ||||| || || || || ||||| || | Sbjct 3265 TGGACGAACTCTTTCCGACTACAATATACAGAAGGAATCAACACTCCATCTTGTCCTTCG 3206 Query 172077 GCTTCGGGGTGGTGCAACCGA 172097 ||||| |||||| || ||| Sbjct 3205 TCTTCGTGGTGGTATAATCGA 3185 >seq35602 Length=773 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||| | ||||| | | || || ||| |||| || | ||| ||| |||||| | Sbjct 772 CTTGGTAAGTTCGAACTCTCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAG 713 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 || || ||||||||||| || || ||||| ||||| | |||| ||||||| | | Sbjct 712 GTGACGTTTGATATAGACGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACC 653 Query 196772 GGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830 || || | ||| ||||| ||| || ||||| ||||| || | || || ||||| || Sbjct 652 GG-GAAGCAGAACAAGATAACGATCACAAATGATAAGGGTCGTTTGTCGAAAGAGGAGAT 594 Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 ||| || ||||| |||||||| ||||||| || || || ||| Sbjct 593 TGAGCGGATGGTAGCCGATGCGGACAAGTACAAGGCTGAGGATGAG 548 >seq40567 Length=576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 171973 CCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCT 172032 || || || ||||| | || || |||||||| ||| | |||||||||||||| || || Sbjct 2 CCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCT 61 Query 172033 GATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || |||||| | || |||||||| || |||| |||||| || | || || || || Sbjct 62 GACTACAACATCCAGAAGGAGTCAACCTTACATCTTGTTTTACGCCTGCGTGGAGG 117 >seq13135 Length=7929 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 78767 GAAACAGCTGTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGTTGATCGAGAATTA 78826 ||||||||||| |||||| | | ||||| | || ||| |||||| ||||||| || Sbjct 7076 GAAACAGCTGTCTGTAATTTGGCTTCTATTTCACTGGGAAAATTTGTTAATCGAGA--TA 7133 Query 78827 A--AGACATTTGATTATTCAAAGCTCCACGAAATTACAAAAATCGTAACTAAAAATTTAA 78884 | || || |||| | | ||||| || ||| |||||||| ||||||| |||||||||| Sbjct 7134 ATCTTACGTTCGATTTTGCTAAGCTACAAGAAGTTACAAAAGTCGTAACCAAAAATTTAA 7193 Query 78885 ATCGTGTAATTGACCGTAACTACTACCCAGTCGA 78918 | || ||||| || || || ||||| || Sbjct 7194 ACAAGGTCATTGATGTTACCTTTTATCCAGTTGA 7227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657516454833680