Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12381 136 8e-27 >seq12381 Length=8583 Score = 136 bits (150), Expect = 8e-27 Identities = 365/565 (65%), Gaps = 3/565 (1%) Strand=Plus/Plus Query 49801 TAATATGATTCGCATATATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATA 49860 ||||||| || | | | || ||| || |||||| ||||| || ||||| ||| | Sbjct 6258 TAATATGTTT---AAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 6314 Query 49861 TAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTG 49920 | |||||||| ||||||| | ||| ||||| | |||| || |||||||| ||||| | Sbjct 6315 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 6374 Query 49921 ATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTC 49980 |||||| |||| |||||| || | ||| || || ||||| || | || | | || Sbjct 6375 CTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTG 6434 Query 49981 CAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAG 50040 |||| | ||||| ||| ||||||| || ||||| | || ||||| | | Sbjct 6435 CAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGCAACAC 6494 Query 50041 AAGGTATATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNN 50100 ||| || || ||| || || || | | |||| | Sbjct 6495 AAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATG 6554 Query 50101 NNNNNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAAT 50160 ||||||||||| ||||||||||| || | | || |||||||| || | | || Sbjct 6555 TATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATTCCAT 6614 Query 50161 AAAATTGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAG 50220 | || | | |||| | ||| ||||| | ||| ||||| | | ||||| Sbjct 6615 AGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGA 6674 Query 50221 ATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCAT 50280 ||||| || ||| ||| || ||||| ||||| ||||| || ||||| ||| Sbjct 6675 GGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGACGTTCCC 6734 Query 50281 TATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCC 50340 | |||||||| |||||| | ||||| || |||||||| || ||||| | |||| Sbjct 6735 CAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCACCTCTTCCACAGTCC 6794 Query 50341 AAAATGATGCTACGGATTTTTTATA 50365 |||| || ||||| | || ||||| Sbjct 6795 AAAAAGAGGCTACAGCCTTCTTATA 6819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983949356358150