Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12381 102 1e-16 >seq12381 Length=8583 Score = 102 bits (112), Expect = 1e-16 Identities = 354/565 (63%), Gaps = 3/565 (1%) Strand=Plus/Plus Query 39103 TAATATGATTCGCATATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATA 39162 ||||||| || | | | || ||| || ||||| ||||| |||||||| ||| | Sbjct 6258 TAATATGTTT---AAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 6314 Query 39163 TAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTG 39222 | |||||||| ||||||| | ||| ||||| | |||| || |||||||| ||||| | Sbjct 6315 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 6374 Query 39223 ATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTC 39282 |||||| |||| |||||| || | ||| ||||| ||||| || | || | | || Sbjct 6375 CTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTG 6434 Query 39283 CAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAG 39342 |||| | ||||| ||| |||||||| || ||||| | || ||||| | | Sbjct 6435 CAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGCAACAC 6494 Query 39343 AAGGTATATTTTCTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNN 39402 ||| || || ||| || || || | | Sbjct 6495 AAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATG 6554 Query 39403 NNNNNNNNNNNNNAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAAT 39462 ||| ||||||||||| || | | || |||||||| || | | || Sbjct 6555 TATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATTCCAT 6614 Query 39463 AAAATTGCCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAG 39522 | || | | |||| | ||| ||||| | ||| ||||| | | ||||| Sbjct 6615 AGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGA 6674 Query 39523 ATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCAT 39582 ||||| || ||| ||| || ||||| ||||| || || || ||||| ||| Sbjct 6675 GGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGACGTTCCC 6734 Query 39583 TATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCC 39642 | |||||||| |||||| | ||||| || |||||||| || ||||| | |||| Sbjct 6735 CAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCACCTCTTCCACAGTCC 6794 Query 39643 AAAAAGATGCTACGGATTTTTTATA 39667 ||||||| ||||| | || ||||| Sbjct 6795 AAAAAGAGGCTACAGCCTTCTTATA 6819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904660022920200