Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3772 95.1 4e-14 seq1712 93.3 1e-13 seq13135 84.2 6e-11 >seq3772 Length=22958 Score = 95.1 bits (104), Expect = 4e-14 Identities = 229/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||| || ||||||| ||||||| || |||| |||||| Sbjct 14211 ATTTCTAACAGTCCCATCGTATTTGATCATAACTGATTCCATAGCTTTAATTAGACGACG 14270 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| || |||||| | ||||| || || || || || | || | |||||||| Sbjct 14271 CTGAATGTACCCAGTTTCGGCGGTTTTGACTGCAGTGTCTATCAAGCCTTCTCGACCACC 14330 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| ||||| || | || ||| || || ||| ||||| | |||||||| Sbjct 14331 CATAGCGTGGAAAAAAAATTCAGTGGGTGTTAAACCAGCAAGGTAGGAGTTTTCAACGAA 14390 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 ||||| | ||| || || ||| |||| |||| ||||| || || | || | Sbjct 14391 GCCACGAGACTCAGGACCATAATCG-TCTTGAATAAAATGTGGTAGCGTACGGTGACGAA 14449 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | ||| | || || | || || |||||||| || || |||| || | || | || | Sbjct 14450 AACCGAAGGGAATTCTTTTACCTTCAACGTTTTGTTGACCCACACAAGCGATGACTTGAG 14509 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880 | || || | | | || || || |||||| ||||||||| Sbjct 14510 AGATGTTAATACGAGAACCTTTAGAACCAGCAACGACCATAATA 14553 >seq1712 Length=34227 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||| ||||||||||| ||||| || || || || ||| | | ||| ||| Sbjct 17701 ATAGTCATACGACTAGGAATAGCATGTGGATTAATAATAATATCTGGTGTAATTCCTTCA 17760 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||||| ||| | | |||| | ||||| ||| || |||||||| || Sbjct 17761 CATGTGAATGGCATAT-CTTCTTGACGATAACGAATTCCACAAGTACCTTTTTGTCCATG 17819 Query 251964 ACGAGAACTGAACTTATCACCAA 251986 ||| | ||| |||||||||| Sbjct 17820 TCGACTAGCGAATTTATCACCAA 17842 Score = 84.2 bits (92), Expect = 6e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| || ||| | |||| ||| ||||| ||| | || || || |||||||||| Sbjct 26604 TATCCATTCTTGTATGAAAATTACTAATATACACACCCATAGCTTGTTTACCCATAGCAC 26663 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA- 252648 | || || |||||||| || || ||||| | || ||||| || || || || ||| Sbjct 26664 TTTGATATGTATTTCTTGGTGATTGATTATGATCAGGGAATGGTAT-AATACTGGCACAT 26722 Query 252649 ACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 | ||| || || | ||||| ||||||||||| || Sbjct 26723 ATACCTAATATCATACTTGGATGAATTTCACAATG 26757 >seq13135 Length=7929 Score = 84.2 bits (92), Expect = 6e-11 Identities = 166/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 156116 AATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATG 156175 ||||||||| ||| ||||| ||||| || | | ||| ||||| ||||| Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 156176 AATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATT 156235 || || |||||||||||| || | |||||| || || ||||| || | |||| Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCAT--TGAT-AGTAGATAGCACGAACTTAATTG 156292 | |||| ||||| ||| ||| |||| ||| |||| || | | | | |||| | || Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAA---AGCTG 5830 Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352 ||| || || |||||||| || ||||| |||| ||||| |||| |||| | ||| Sbjct 5829 TGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 5770 Query 156353 CAT 156355 ||| Sbjct 5769 CAT 5767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471024276975253