Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1712 114 2e-20 >seq1712 Length=34227 Score = 114 bits (126), Expect = 2e-20 Identities = 220/320 (69%), Gaps = 6/320 (2%) Strand=Plus/Minus Query 193726 ATGGTTTTGATTATACTGGGTCTGAAACAATGTATTGTGGGTTTACTGGTAAAAGAATTG 193785 |||||| | | |||| || ||||| |||||| ||| |||||||| | || |||| Sbjct 16417 ATGGTTATCAACATACCGGTAATGAAATTATGTATAATGGATTTACTGGAAGAA-AATTA 16359 Query 193786 AAAATA-AAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGAT 193844 || | ||||||| |||| |||||||||||||| ||| | |||||||||||| | ||| Sbjct 16358 AATTCACAAATTTTCTTAGGACCAACTTATTATCAACGTTTAAAACATATGGTTGATGAT 16299 Query 193845 AAAATGCATGCTAGAAGTCATGGACAAGT--GACTACTTTACATCGACAACCAAATTGTG 193902 ||||| ||| | | | ||||| || | ||||| |||| ||||| | | Sbjct 16298 AAAATTCATAGTCGTTCACGTGGACCTGTACAAATACTT--AATCGTCAACCTATGGAAG 16241 Query 193903 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTC 193962 ||||| || | ||| ||| || | ||||| |||||||| || ||| ||| || Sbjct 16240 GTCGTAGTCGTGATGGTGGTCTACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTC 16181 Query 193963 ATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCG 194022 ||||||| | ||||| || |||| | | ||||| | |||||| | |||||| Sbjct 16180 ATGGTGCAGCACAATTTTTACGTGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTTT 16121 Query 194023 ATGTTTGCACAGAATGTGGT 194042 |||| || | ||||||| Sbjct 16120 ATGTGTGTAATTTATGTGGT 16101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 193482 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGT 193541 |||||||| |||||||| || |||| ||||||||||||||||| ||| | ||| Sbjct 17813 CAAAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 17754 Query 193542 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCC 193579 || |||||||||||||||||||||| || |||||| Sbjct 17753 ATTACACCAGATATTATTATTAATCCACATGCTATTCC 17716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634843583919320