Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1712 111 2e-19 >seq1712 Length=34227 Score = 111 bits (122), Expect = 2e-19 Identities = 199/287 (69%), Gaps = 8/287 (3%) Strand=Plus/Minus Query 201876 GAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCC 201934 |||| |||||| ||| ||||| ||||||||| || || | ||||||| |||| || Sbjct 16394 GAAATTATGTATAATGGATTTACTGGAAGAAAA-TTAAATTCACAAATTTTCTTAGGACC 16336 Query 201935 AACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGT---CA 201991 ||| || ||||| ||| | |||||||||||| | |||||||| ||| || || | Sbjct 16335 AACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCAT---AGTCGTTCACG 16279 Query 201992 TGGTCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATT 202051 ||| | ||| || | | |||||||||| | ||||| | | |||||| | Sbjct 16278 TGGACCTGTACAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 16219 Query 202052 AAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAA 202111 | | ||||| ||||||||| |||||| | | |||||| || ||||||||||| Sbjct 16218 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACG 16159 Query 202112 TGAAAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGTA 202158 |||| | | ||||| | ||||| | |||| | ||||||||| Sbjct 16158 TGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTTTATGTGTGTA 16112 Score = 82.4 bits (90), Expect = 1e-10 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206 ||||||||||||||||| || |||||| || || || || |||||||||||| |||| Sbjct 23070 GGTATTAATGCAATTGTTGCCATTGCAACATATACCGGTTATAATCAAGAAGATTCTGTT 23011 Query 201207 ATTCTTAAT-AAAGCATCTATTGAAAGAGGTTTATTCGGTACCACAA-CTTATAATACTT 201264 ||| | ||| ||||| |||| || | ||||| || | | || || |||| ||||| Sbjct 23010 ATTATCAATGAAAGC-GCTATACAACGTGGTTTCTTTCG-ATCAGAATTTTATCGTACTT 22953 Query 201265 TTACAGCTGAAGAAACAAAAAATGGTAT 201292 || || | ||||||| | ||||||| Sbjct 22952 ATAAAGATCAAGAAACGCGACATGGTAT 22925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654935412821000