Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1712 102 1e-16 >seq1712 Length=34227 Score = 102 bits (112), Expect = 1e-16 Identities = 204/298 (68%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 193301 TGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATA-AAATTTTTATAGGGC 193359 ||||| |||||| || |||||||| || |||||| || | ||||||| |||| | Sbjct 16395 TGAAATTATGTATAATGGATTTACTGG-AAGAAAATTAAATTCACAAATTTTCTTAGGAC 16337 Query 193360 CAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATG 193419 |||||||||| || ||| | ||||| |||||| | |||||||| ||| | | | || Sbjct 16336 CAACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCACGTG 16277 Query 193420 GGCAAGT--GACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTT 193477 | | || | ||||| |||| ||||| | |||||| || | ||| ||| | Sbjct 16276 GACCTGTACAAATACTT--AATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 16219 Query 193478 AAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAA 193537 | | ||||| ||||||||| || ||| ||| |||||||| | ||||| ||| Sbjct 16218 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACG 16159 Query 193538 TGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGT 193595 |||| | | ||||| | |||||| | |||||| |||| || | ||||||| Sbjct 16158 TGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTTTATGTGTGTAATTTATGTGGT 16101 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 193035 CAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGT 193094 |||||||| |||||||| || |||| ||||||||||||||||| ||| | ||| Sbjct 17813 CAAAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 17754 Query 193095 ATGGTACCAGATATTATTATTAATCCAAATTGTATTCC 193132 || |||||||||||||||||||||| || |||||| Sbjct 17753 ATTACACCAGATATTATTATTAATCCACATGCTATTCC 17716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628200679011840