Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq24713 181 8e-40 seq11941 178 1e-38 seq35195 149 5e-30 seq11450 93.3 3e-13 >seq24713 Length=2438 Score = 181 bits (200), Expect = 8e-40 Identities = 460/696 (66%), Gaps = 8/696 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| |||||||||||||||||||| | |||| || | |||| | || | ||| Sbjct 14 CGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAAT 73 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||| |||| | ||| | | |||||| || |||||||||| |||||| || Sbjct 74 ATACCATCCTCAATCGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATC 133 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | ||||| || | || || || | |||||| |||| || ||||| || Sbjct 134 AACACATTACGCTCACCACCAACCTTCTTGTCCAAACCATAGGCAATTGCCGCAGCTGTC 193 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || ||||| |||||||| |||||||||||||| || ||||||||||| || ||| Sbjct 194 GGCTCGTTAATTATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCT 253 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTT 282486 || | ||| || || || || |||||||| || ||||| || || | | | || | Sbjct 254 TGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTG 313 Query 282487 TCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTG 282543 |||| |||| ||| || | ||||| || | || | |||||| ||||| | Sbjct 314 CCCAA-ATAA---CTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTC 369 Query 282544 TTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 282603 ||| | ||| | ||| ||| | ||| || || | | || ||| Sbjct 370 TTCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCACC 429 Query 282604 AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 || | | | || | ||||||||||| |||||||| || || | | |||| || Sbjct 430 GACTTGAGTCACCTCAAATGGCCAATGCTTCATATCACTCTGCACTGATGGATCATCGAA 489 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTG 282723 | ||| |||| || || |||||||| | ||||| ||||| || | || |||| Sbjct 490 CCGACGACCGATTAGACGCTTCGCATCAAACACTGTATTTGTTGGGTTCATCGCCACTTG 549 Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 282783 | || ||| |||| ||||| | | | || | ||||| || | ||||| || || Sbjct 550 GTTCTTCGCTCCATCACCAATTAAACGCTCAGAGTCTGTGAACGCCACATAACTCGGTGT 609 Query 282784 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTAC 282843 || | ||||| || ||||| ||||| || || |||||||||| || | ||||| || Sbjct 610 CGTTCTGTTACCCTGGTCATTGGCAATTATCTCCACTTTACCATGCTGGAAAACACCAAC 669 Query 282844 ACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||| | ||||| || | ||| || ||||| || Sbjct 670 ACACGAGTATGTTGTACCAAGATCGATTCCAATGGC 705 >seq11941 Length=8966 Score = 178 bits (196), Expect = 1e-38 Identities = 384/569 (67%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || || || || | |||||| ||||| | ||| | || |||| | ||||| ||| Sbjct 4946 GTACCTCCTCCAAGATCAAATATAAGAATATTTTTCTCACCATCTT---TCTTATCTAGA 4890 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| |||||||||||||||||||||||||| | | | ||| | ||||||| Sbjct 4889 CCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATATTCAAACCAGCA 4830 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || |||||||| || || || | |||| ||||||||||| || ||||||||| Sbjct 4829 ATTGTACCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAAGCTGGAACAGTA 4770 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | ||| |||| || || | ||| |||| |||||| || | ||||||||| | | Sbjct 4769 ACAACTGCATGAGTAACCTTTTTGCCAAGATAAGCTTCAGCAAACTCTTTCATTTTCCCT 4710 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGAT-----ATG 282578 || | ||| | || || | || || | | | |||| ||| |||| || Sbjct 4709 AACACCATAGCAGAGATCTCCTCCGGGGCAAAAGTCTTGACTTC----TGATCCAACGTG 4654 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | ||||| | ||| || ||||| ||||| || ||| || ||| | || | Sbjct 4653 A-ACTTCGACATACGGCTTATTCTTTTTATTAACGACGGAAAAAGGGAAATGAGTTATGT 4595 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 | || ||| | |||| || | ||| ||||| | || || | || ||||| | Sbjct 4594 CACCCTGTACAGTAGATTCATCGAACTTTCTTCCAATAAGTCTCTTGACGTCGAAAATTG 4535 Query 282699 TATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT---CT 282754 | || ||||| || |||| || | ||| || |||||||||||||| | | || Sbjct 4534 TGTTTTCCGGATTCGATGTCAGC-TGGTTTTTAGCAGCATCTCCAATCAGTCGCTCGCCT 4476 Query 282755 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 282814 | || |||| |||||||| ||||| | | ||||| |||||||||||||||||| Sbjct 4475 TCCGGAGTGAATGCCACATATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATT 4416 Query 282815 TCAACTTTACCATTTTGCCATACACCTAC 282843 |||||| || ||| ||||||| || Sbjct 4415 TCAACTCGGCCTCCTTGAAATACACCAAC 4387 Score = 105 bits (116), Expect = 5e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 4894 CTAGACCGTAAGCAATTGCAGCAGCAGTTGGTTCATTAATAATCCGGAGTATATTCAAAC 4835 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| || ||| ||| ||||| || | ||||||||| |||||||| ||||| | Sbjct 4834 CAGCAATTGTACCAGCATCTTTGGTTGCCTGGCGCTGTGCGTCGTTAAAATAAGCTGGAA 4775 Query 86234 CAGTAATAACTGCTTTATTAA 86254 |||||| |||||| | | ||| Sbjct 4774 CAGTAACAACTGCATGAGTAA 4754 >seq35195 Length=800 Score = 149 bits (164), Expect = 5e-30 Identities = 509/778 (65%), Gaps = 28/778 (4%) Strand=Plus/Plus Query 281458 ATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATT 281517 |||||| || || ||||| ||||| || | ||||||||||||| ||| | | Sbjct 6 ATCAAACGTCACCTCAATCTGAGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTC 65 Query 281518 AAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT 281577 || | || || ||| || || ||||| | | || || |||||||| | ||||| Sbjct 66 GAACTTACCAAGCAGATTGTTGTCCTTAGTCAGTGCACGCTCGCCCTCGAACACCTGGAT 125 Query 281578 AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGA 281635 | || ||| ||| || ||||| || || || || | | || | | || ||| Sbjct 126 AAGCACACCAGGTTGGTTGTCTGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGA 183 Query 281636 ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGA 281695 ||||| ||||| | | ||| | | ||||| | ||| ||||| ||||| | ||| || Sbjct 184 ATTGTCGTGTTACGCTTAATCAAAGCCGTCATCACACCTCCAGCCGTTTCAAGACCCAGT 243 Query 281696 GAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAAC 281754 || || |||| || |||| | | | | || | ||| || || | |||| Sbjct 244 GATAGTGGAGCTACGTCAAGCAACAGCAAGTCCTGCACAGCCTCA-CACTTATCACCACT 302 Query 281755 AAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTC 281814 ||||||||||| || | ||| |||||||| || ||||||||||| ||||||| || || Sbjct 303 TAGAATAGCTGCCTGCACAGCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTT 362 Query 281815 ATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 281873 || | | ||| || ||||| || | ||| || | || | || ||||| ||||||| Sbjct 363 GTTCAACTCTTTCCCGTTGAAGAAGTCTTGTAACAGCTTCT-GCACTTTAGGGATACGAG 421 Query 281874 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 281933 || || |||||||| || || || || | ||| || || |||| || | ||| || Sbjct 422 TGGAACCACCAACTAACACTATGTCGTGAATCTGGGACTTGTCCATCTTAGCATCTCGTA 481 Query 281934 AAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATT 281993 || | || |||||||| || | | | | || | || | | | || || ||| Sbjct 482 AAGCCTTCTCAACGGGATCCAACGTACCACGGAATAGATCGGCATTCAACTCCTCAAATC 541 Query 281994 TAGCTCTAGTAAGAGTGAC---ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 || | ||| | | || | | ||||||| || || |||| || |||| || | Sbjct 542 GTGCACGAGTGA---TCACCGTGTAAAAATCAATACCATCACACAACGAGTCAATCTCCA 598 Query 282051 TCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTA 282107 | || || | ||||| || ||| ||||| ||||||||||| |||||||| | Sbjct 599 GATTCGTCTGGGCACTCGAACTCAAT-GTG--CGTTTCGCACGTTCACACGCTGTCCTCA 655 Query 282108 GTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATC 282165 | | || || || ||| |||| | | || | ||| | ||||| ||| ||| || Sbjct 656 GACGACGCAATGC--ACGCTTATTGCTACGGATGTCTTTACTGTATTTCTTCTGGAACTC 713 Query 282166 TTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTAT 282221 || |||| || | || | ||||| |||||||||||||||||||| | |||| Sbjct 714 TT--TCACAAAGTGATCCACCATGCGATTGTCAAAATCTTCACCTCCCAAGTGTGTAT 769 >seq11450 Length=9373 Score = 93.3 bits (102), Expect = 3e-13 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| ||||||||||||| ||| || | ||||| || | |||| | || | ||| Sbjct 311 CGATTGTCAAAATCTTCACTTCCAAAGTGCGTATTACCAGCAGTAGACTTCACCTCGAAT 370 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||| |||| || | | | || |||||| || |||||| ||| ||||| || Sbjct 371 ACACCATCCTCAATAGTCTAGATAGACACATCAAATGTACCACCAACCAAGTCAAATATC 430 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | ||||| ||| || | || || | |||||| | || || | | | || Sbjct 431 AAAACATTACGTTCACCATCAACTATCTTGTCCAAACCATAGGTAATTGCCGAAACTGTC 490 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || ||||| |||||||| |||||||||||| | | |||||||||| || ||| Sbjct 491 GGCTCGTTAATGATTCTCAACACATTAAGACCAACTACAGCACCTGCATCTTGCGTTGCT 550 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468 | | ||| || | || || |||||||| | ||||| Sbjct 551 TCACGTTGACTGTCACTGAAGTAAGCAGGAACTGCTATAAC 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738564989883594