Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq12381 91.5 1e-13 >seq12381 Length=8583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 50220 TGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTG 50279 ||||| |||||||| | |||||||| | |||| | | ||| |||||| Sbjct 6495 TGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAATCTACTTTT 6436 Query 50280 GCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCA 50339 || ||||| ||||| || ||||| ||| |||||||| |||||||| |||||||||||| Sbjct 6435 GCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTTGCA 6376 Query 50340 GCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTG 50399 || ||||| | |||| | ||| | ||||| || || | |||||||| || || Sbjct 6375 GCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAATGAATTA 6316 Query 50400 ATTTCGCGCGACGAAGGA 50417 || | ||||||||| Sbjct 6315 ATCAGTAGAGACGAAGGA 6298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488287093030800