Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq5920 93.3 1e-13 >seq5920 Length=17038 Score = 93.3 bits (102), Expect = 1e-13 Identities = 186/266 (70%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 188790 TTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTAT 188849 || ||| |||||||| || |||||||| |||||| || ||| |||||||| | ||| | Sbjct 4041 TTTAGGCAAAACATTGTTGGCTCAAACTTTGGCTCATTATTTAAATGTACCTTTTGCTCT 3982 Query 188850 CTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAA--AACGTA 188907 | |||| || | |||| ||||||||||||| ||||||||||| ||| ||| | Sbjct 3981 TTATGATTGTACAAGTATAACCCAAGCTGGTTATGTTGGTGAAGATGTTGAATCAAC-CA 3923 Query 188908 TTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTA 188967 ||| | | ||| | ||| || ||| | || | ||| | || ||| || || || Sbjct 3922 TTG-GTAGATTATTACAAAATGCGAATTTCAATGTGGAACTTGCTCAACAAGGTATAGTG 3864 Query 188968 TATATCGATGAAGTAGATAAAAT-TGCTAGAAAATCAGAAAGCA-CATCCAT-TACCCGA 189024 | | |||||| |||| ||||| ||| |||| | | ||| |||| | ||| ||| Sbjct 3863 GTTCTAGATGAAATAGACAAAATAAGCTCTAAAA-CTG--GGCATCATCTTTCTACACGA 3807 Query 189025 GATGTATCTGGCGAAGGAGTACAGCA 189050 ||||| ||||||||| || || || Sbjct 3806 GATGTTAGTGGCGAAGGTGTTCAACA 3781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591052345867712