Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3772 98.7 2e-15 seq7153 87.8 4e-12 >seq3772 Length=22958 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | |||||| | ||||||||||||||||||||| |||| || ||||| || Sbjct 15533 TTCAATCGTCAACCAACGCTGCATAAAATGTCTATGATGTGTCATCGTGTTAAAGTCTTG 15474 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | | || ||||| ||||| || || | | | || |||||||| ||||| || Sbjct 15473 CCTTGGTCTACGTTTCGTCTAAATCTATCTGTTACTTCACCGTATAATGCTGATTTCGAC 15414 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 || ||||||||||| | ||| | || ||||| Sbjct 15413 GGCGATGAAATGAACTTACATCTCCCACAATC 15382 >seq7153 Length=14722 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| |||||| |||| |||||||| || ||||||| ||| | Sbjct 4338 CATCATACCACCCGCATTATCAAATTCAC-CGCAATAATTTGGAGCAGAAAATAAAGTTA 4280 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTT 167343 |||||| |||| | || ||||| ||||||||||||| |||| Sbjct 4279 CTAATTGACGACGACAGAAAAATTCGAAACCATCTTCAACTACTT 4235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186173097145309