Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq12381 206 4e-48 seq13135 98.7 1e-15 >seq12381 Length=8583 Score = 206 bits (228), Expect = 4e-48 Identities = 507/759 (67%), Gaps = 15/759 (2%) Strand=Plus/Plus Query 39478 CATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTT 39537 ||||| || |||||||| || || | | |||||||| || || | || |||||| | Sbjct 6139 CATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAACTCCTG 6198 Query 39538 TTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCA- 39596 ||| || || |||||| ||||||| || || || | || | || || | Sbjct 6199 TTCTATCAGAACCGCCTCTCTTATTATTGACTCAAC-ACGT--TCTTTGGGAGGCTTTTT 6255 Query 39597 -ATAA-ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAAT 39654 |||| ||||||||||| || || ||||| ||||||||||| || || |||||||| || Sbjct 6256 GATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGAT 6315 Query 39655 TAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGC 39714 |||||| || ||| | ||||||||||| ||||| || || || ||||| ||||| || Sbjct 6316 TAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGC 6375 Query 39715 AGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774 ||||| |||||||| |||| ||||| ||||||||||| ||||| | | ||| | Sbjct 6376 TGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTGC 6435 Query 39775 GTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACA 39831 || | | || || | ||||| | |||||| | ||| || || ||||| Sbjct 6436 AAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGCAACACA 6495 Query 39832 AGGCATTGTTTC-TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATG 39890 || | ||| | ||| || || |||||| | | |||| | | ||||| | |||| Sbjct 6496 AGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATG 6554 Query 39891 TATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGT 39950 |||| ||||| | | |||||||| || || || || || || || ||||| | ||| | Sbjct 6555 TATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATTCCAT 6614 Query 39951 AAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCAT 40010 | ||||| | | || | ||| || || ||| || || | |||| | || || Sbjct 6615 AGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGA 6674 Query 40011 TCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCAT 40070 || || || ||||| || ||||| || || || || | || |||| ||| Sbjct 6675 GGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGACGTTCCC 6734 Query 40071 CGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 40130 | | | || | ||| | ||| |||||| |||| ||| || ||||| | |||| Sbjct 6735 CAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCACCTCTTCCACAGTCC 6794 Query 40131 AAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAA 40190 |||| || || | ||||| || || | | ||| | ||| | |||| ||| || |||| Sbjct 6795 AAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAAAA 6854 Query 40191 TAACAAATCTATTTGGATTT--TTTGCAAGGATGGGTTC 40227 || || | | ||| ||| |||| || | |||||| Sbjct 6855 GGACGAAGCGGTGTGGGTTTGGTTTG--AGTAAGGGTTC 6891 >seq13135 Length=7929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 166/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||||||||| || | ||||||||||||| || || | || | |||||| ||| Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || | ||| || || || || || ||||||| || | ||||| ||||| || || Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 || || || ||||| ||||| ||| |||| | | |||||||| || || | || || Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG-TG 5828 Query 69984 ATGTA-TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || ||| || || ||||| | ||| || || || || || ||||| |||||||| Sbjct 5827 GTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 5770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || |||||||| || || ||||| || || |||||| ||||||| || ||||| Sbjct 7461 TACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATAC 7402 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 |||||| |||||||||||||| || |||||||||||||| || || | ||| | | Sbjct 7401 CTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGC 7342 Query 69136 TTATTTGAACT 69146 | ||||| || Sbjct 7341 ATGTTTGATCT 7331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686547580421160