Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12381 156 3e-33 seq128 125 6e-24 >seq12381 Length=8583 Score = 156 bits (172), Expect = 3e-33 Identities = 389/587 (66%), Gaps = 9/587 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || |||| || || | ||||| | || || || || || Sbjct 6861 TTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCC 6802 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | ||||| || ||||| | ||||| | ||||||| | ||| Sbjct 6801 TCTTTTTGGACTGTGGAAGAGGTGGATTTATCCAAAGATCTCATACATTGGGAGTCTTTA 6742 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||| ||| ||||| ||||| | || || || || ||||| || || ||||| Sbjct 6741 AAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCAAGTGACGGC 6682 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || ||| || || | | || || |||||||| || | ||||| | || Sbjct 6681 ATTGTCCTCGAGAACCTCCTGGAACGCTTCAGTCAAGAAGTCCAGATTCCAGAGGTTCGT 6622 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 ||||| ||||| | || || || || || |||||||| || ||||||||| | | | Sbjct 6621 TGTTTCTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTA 6562 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAAC 44058 || ||||| ||||||||||| | || | | | | || || || ||| | ||| Sbjct 6561 ATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAAC 6502 Query 44059 AGTACCTGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATTCAAAT 44113 || || | | |||| || || | ||||| | | ||||| |||| || Sbjct 6501 TTAACTTGTGTTGCTAAA---AAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAA 6445 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | |||||| |||||| | || || ||||||| |||||||| | || ||||| || Sbjct 6444 TCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGT 6385 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 ||||| || ||||| ||| | |||||||||||| | |||||||| || | ||| Sbjct 6384 AGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGC 6325 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||||| ||||| ||| | || ||||| ||||||| ||||| ||||| Sbjct 6324 AATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTG 6278 >seq128 Length=73186 Score = 125 bits (138), Expect = 6e-24 Identities = 185/258 (72%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 ||||| || ||||| || | | || || ||||| ||| ||| |||||| |||| || Sbjct 72877 AAACACGTCCGTGGTATTCTTTTATACGGTCCACCTGGTACTGGTAAAACACTAATGGCA 72818 Query 19396 AGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || || || ||||| | |||| || ||||| |||||||| |||||||| Sbjct 72817 CGACAAATTGGTAAAATGCTTAATGCACGTGAACCT---AAAATTGTCAATGGTCCAAGT 72761 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| |||||||||| ||| |||| |||| ||| | || || || ||||| ||| Sbjct 72760 ATATTAGATAAATATGTTGGTGAATCTGAAGCGAATATCCGTAAATTATTCGCTGATGCT 72701 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGC-AAAAGTTCTTTGCACATTATAATACTAGATGA 19571 ||||||||| ||||||| | ||| || ||| | | ||||| ||||| ||| | ||||| Sbjct 72700 GAAGAAGAAGAAAAACGCAT-GGGTGCTAAATCTGCATTGCATATTATTATATTTGATGA 72642 Query 19572 ATTGGACGCAATCTGTAA 19589 | | || || || ||||| Sbjct 72641 AATTGATGCGATTTGTAA 72624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397252217974345