Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq17028 100 7e-16 seq5736 96.9 8e-15 seq16733 93.3 1e-13 seq16476 89.7 1e-12 >seq17028 Length=5425 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| | | | | Sbjct 1218 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGCCCC 1159 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || |||||||||| | |||||| |||| | | |||| || | || ||||| Sbjct 1158 CGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGCGAACTTAACGCG 1099 Query 7856 TTAGCTT 7862 ||||||| Sbjct 1098 TTAGCTT 1092 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 528 TGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 586 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||||| |||| ||||| || Sbjct 587 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAG 626 >seq5736 Length=17499 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| |||||||| ||||||||||| || || || || || ||||| |||||||| Sbjct 9903 GAAAATTTGCCCATCAGTTATAGAGATAACGTTAGTTGGAATGTATGCAGATACATCACC 9962 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || |||||||| | || || | |||||||||||| || || ||| Sbjct 9963 AGCCTGTGTTTCAATGACTGGAAGGGCTGTTAGTGAACCGCCTCCA 10008 >seq16733 Length=5584 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||| ||||| || ||||| || || | |||||| |||| | ||| Sbjct 3199 ACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGT 3258 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || || ||||| || || | ||||||||||| || || || || Sbjct 3259 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCC 3318 Query 225612 TTCCTT 225617 ||| || Sbjct 3319 TTCTTT 3324 >seq16476 Length=5723 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||| | || |||||||| || || ||||| Sbjct 504 TTCTGGATGACCAAAAAATCAAAATAAATGTTGAAACAGTATAGGATCACCACCACCTGA 445 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 || |||||||| |||| ||| || | |||| Sbjct 444 CGGCTCAAAAAAAGCAGTACCAAATTTACGATCA 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191888414875886