Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq12381 230 2e-55 >seq12381 Length=8583 Score = 230 bits (254), Expect = 2e-55 Identities = 483/715 (68%), Gaps = 14/715 (2%) Strand=Plus/Plus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 |||||| | |||||| |||||||| | ||| |||| ||| || || |||||||| || || Sbjct 6112 GTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGAC 6171 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||||| || | | |||||||| |||||||| || || ||| | ||||| | Sbjct 6172 TGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTC 6231 Query 4502 TATTTTATCTTTAGATGGTTTATT--TACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | ||||| | || || || || || || | |||||||| ||| || |||||| Sbjct 6232 AACACGTTCTTTGGGAGGCTTTTTGATAATATGTTT--AAACAATAGACAAGCGAAATCA 6289 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 ||||| | ||||||||||| || || | ||| || ||| | | ||| ||||| | | Sbjct 6290 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 6349 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || |||||||| |||||||| ||||| |||||||| || | ||||| || Sbjct 6350 CCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACT 6409 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTAATCCATTTTA 4737 || ||||| || ||||| | | | | | || | || | || |||||| | || Sbjct 6410 GCTGCAAAAGCAACTAA--GCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTA 6467 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794 ||||||| | ||| ||||| ||| || | | || ||| ||||| || || | Sbjct 6468 ATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGT 6527 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 |||| || | | ||||| || || || || |||| || ||||||||||| | Sbjct 6528 CCCTTTCTTTA---GAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGT 6584 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | ||||| || ||||| ||||| | ||| || || || | | | |||| | || |||| Sbjct 6585 GAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTT 6644 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | || || | ||| | | ||| ||| || || |||||||| || ||||| || | Sbjct 6645 CTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGG 6704 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | || || | ||||| || | |||| || || | | ||| || | || Sbjct 6705 CTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGAT 6764 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 |||| | |||||| || ||||| ||||||||||| || ||| | || || || || Sbjct 6765 CTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATA 6819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426830644863977