Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12381 190 3e-43 seq13135 104 3e-17 >seq12381 Length=8583 Score = 190 bits (210), Expect = 3e-43 Identities = 610/940 (65%), Gaps = 71/940 (8%) Strand=Plus/Plus Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889 || |||||||||| || |||||||||||| || || ||||| || || ||||| | Sbjct 5931 CTCGAGACATAACACCAGCCCGTTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCT 5990 Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-------- 47941 | ||||| | |||||| |||||||| || ||||| ||||| | | || ||| Sbjct 5991 TCCCTTCGATTGATATGTTTTCCATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAA 6050 Query 47942 --------AAtt--------------------tttttAAATCCTAATTCTGAAATCAGT- 47972 |||| |||| | | || | ||| || |||| Sbjct 6051 AGGAAAACAATTAAATAGAAGATTTACAAACCTTTTCATAACCAAGTTC---AACCAGTA 6107 Query 47973 --CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 || || || | ||||| ||||| ||||| || |||||||| || || | Sbjct 6108 GCCTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGC 6167 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 | |||||||| || || | | |||||| ||||| || || || || |||||| | Sbjct 6168 TGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTG 6227 Query 48091 ATGTTACCGTTTCCTCACTTGGTGGATACA--ACAA-ATGTTTAAACATTAAACATGCAA 48147 | || ||| | | || || | | || ||||||||||| || ||| || | Sbjct 6228 ACTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGA 6284 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 |||||||||| || ||||| |||||||| |||||||| || ||| | || || |||| Sbjct 6285 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 6344 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 48266 | || || ||||| || ||||| ||||| || || |||| | |||||||| || | ||| Sbjct 6345 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGC-AAAGCTACCAGAAAAAAAGACACCT 6403 Query 48267 TCTACGGCCGCAAATGC-GGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-----ATC 48320 || || || ||||| || |||| | ||| | || | | || | | | ||| Sbjct 6404 TCCACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATT--TAGAATCACCAATC 6460 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC-TATAGCATTAAA 48379 || | |||||| | |||||| || ||||||| | ||| | ||| || || || Sbjct 6461 CAATCTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAA 6519 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||||||| |||| || ||||| | ||| ||||| ||||| | | |||||||| Sbjct 6520 GAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTC 6579 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 ||||||||||| || || || ||||| | ||| || ||||| | | |||| ||||| Sbjct 6580 AGAGTGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTG 6639 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 || || || || ||||| | ||||| || || || ||||| || ||||| Sbjct 6640 GACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAA 6699 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA-----TTCCAG 48614 || ||||| || | || |||| ||| || | |||| | ||| Sbjct 6700 GAAGGCTAACACGTAGGATATGAAATGACGTTC--CCCAACT---TTTAAAGACTCCCAA 6754 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | ||| |||||| |||| ||| || ||||| | |||||||| || || | || || Sbjct 6755 TGTATGAGATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTC 6814 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAA 48714 ||||| | || ||| | ||| ||||| || ||||||| Sbjct 6815 TTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAAAA 6854 >seq13135 Length=7929 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 |||||| || || |||||||||||||| || || | |||| |||||| ||| Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 || || || || || || || | |||||||| | || || ||||| ||||| Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391 ||| || || |||||||| || || |||| | | |||||||| || || | || | Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 5827 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | | ||| || || ||||| | |||||| || ||||| |||||||| |||||||| Sbjct 5826 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 5770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694303499728160