Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12381 192 8e-44 seq13135 96.9 5e-15 >seq12381 Length=8583 Score = 192 bits (212), Expect = 8e-44 Identities = 613/949 (65%), Gaps = 59/949 (6%) Strand=Plus/Plus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||| |||||||| || || ||||| || || ||||| || ||||| | |||||| ||||| Sbjct 5953 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCGATTGATATGTTTTC 6012 Query 46401 CATAAAATCAAACGGATT--------------------AGTAACA--------------- 46425 ||| || ||||| ||||| || || | Sbjct 6013 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 6072 Query 46426 -TTATAAAtttttttAAATCCTAATTCTGAAATCAGT---CTATCTGCAACGAATTCTAT 46481 ||| ||| |||| | | || | ||| || |||| || || || | ||||| || Sbjct 6073 TTTACAAACCTTTTCATAACCAAGTTC---AACCAGTAGCCTGTCAGCGATAAATTCAAT 6129 Query 46482 ATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAG 46541 |||| ||||| || |||||||| || || | |||| ||||| || || | | Sbjct 6130 ATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAA 6189 Query 46542 AAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGG 46601 |||||| ||||| || || || || |||||| || || ||| | | || Sbjct 6190 AAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGACTCAACACGTTCTT---TGGG 6246 Query 46602 TGGATGC---ATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATC 46658 || | || | ||||||||||| || ||| || ||||||||||| || ||||| || Sbjct 6247 AGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTC 6306 Query 46659 TCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCA 46718 |||||| |||||||| || ||| | || |||||||| || || || || || ||||| Sbjct 6307 TCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCA 6366 Query 46719 AAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAA 46777 |||||||| || |||| | |||||||| || | ||||| || || || || || || | Sbjct 6367 GAATATAGCTGC-AAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTA 6425 Query 46778 GTCTCTCTCCGTAACTGG---CATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTT 46834 | ||| | || | | | || | |||||| | ||||| | |||||||| Sbjct 6426 AGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTT 6485 Query 46835 TCTTTACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCT 46893 | ||||||| | ||| | ||| || || |||||||||| |||| | | ||| Sbjct 6486 TAGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCT 6544 Query 46894 TTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 || | |||||||| ||||| | | |||||||| || ||||| || || ||||| ||| Sbjct 6545 TTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATC 6604 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC 47013 || | ||| || ||||| | | || | |||||| || ||| || || ||||| Sbjct 6605 TGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAGG 6664 Query 47014 AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 | ||||| || || || ||||| || ||||| || || || || | || ||| Sbjct 6665 AGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATATGAAA 6724 Query 47074 TATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 | ||| | | | | ||| | ||| |||||| |||| ||| || ||| Sbjct 6725 TGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCACCTCT 6784 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193 || | ||||| || || || | || || ||||| | || ||| | ||| | |||| Sbjct 6785 TCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCT 6844 Query 47194 ATCGGAAAAATAACAAATCTATTTGGATTT--TTTGCAAGTATAGGTTC 47240 || || |||| || || | | ||| ||| |||| |||| ||||| Sbjct 6845 ATGGGGAAAAGGACGAAGCGGTGTGGGTTTGGTTTG--AGTAAGGGTTC 6891 >seq13135 Length=7929 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 ||||||||||||| || || | |||| ||||| ||| || | ||| || || Sbjct 5990 CCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATGAACATTTAGTCCAATA 5931 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || ||||||| || | ||||| ||||| || || || ||||| |||||| Sbjct 5930 CCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATCGTAAATGCCTTCTATA 5871 Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 ||||| || |||| | | |||||||| || || | || | | | ||| || || Sbjct 5870 CTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGGTTTAGGAGTCCCAGCG 5811 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043 ||||| | ||| || || ||||| || ||||| |||||||| Sbjct 5810 TTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 5770 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 75908 ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCG 75967 ||| |||| | ||| ||| || || || || || || || || | ||||| ||| Sbjct 7572 ACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCA 7513 Query 75968 TAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTT 76027 || ||||| | | | ||||| | ||| ||| || | | | | || |||||| Sbjct 7512 TATGTCCCTTGGTCAACTGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTT 7453 Query 76028 TCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA 76087 || || || |||||||| || |||||| |||||||||| ||||| |||||| Sbjct 7452 TCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGA 7393 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 |||||||||||| || || ||||| ||||||||||| || | ||| Sbjct 7392 CAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATG 7346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712559494534080