Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq40567 93.3 9e-14 seq16733 93.3 9e-14 seq14408 93.3 9e-14 >seq40567 Length=576 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| | || |||||||| || || || |||||||||||||||| Sbjct 117 CCTCCACGCAGGCGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGAC 58 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || || || ||||| || | || || || || ||||||||||||||||||||| Sbjct 57 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCA 4 >seq16733 Length=5584 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || ||||| | || ||| || || || |||||||| | Sbjct 3193 ACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGTCGGA 3252 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 ||| || || ||||| || |||||||| || ||||| || |||||||||||||| Sbjct 3253 AAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTC 3306 >seq14408 Length=7032 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||||||||| ||||| || | || ||||| || || || || Sbjct 7032 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 6973 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || ||||| ||||| ||||||||||||||| Sbjct 6972 CTCCAACGTGATCGTCTTCCCTGTCAATGTCTTTACGAATATCTGCATT 6924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046174998085126