Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq12381 239 5e-58 >seq12381 Length=8583 Score = 239 bits (264), Expect = 5e-58 Identities = 476/700 (68%), Gaps = 14/700 (2%) Strand=Plus/Plus Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397 ||||| || || | |||||||||||| |||||||||| | | || || || |||| Sbjct 6107 AGCCTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAG 6166 Query 23398 TTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT 23457 | ||||| | || || |||| || | ||| || ||| || ||| | |||||| Sbjct 6167 CTGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATT 6226 Query 23458 TGAACAATAACTTCTTCACTAGGTGGATATTTTA-AATAC--TTAAACAATAAACATGCA 23514 ||| | ||||| | || || | ||| | |||| |||||||||| ||| || Sbjct 6227 GACTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCG 6283 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 |||||||||||||| ||||| || ||||| || |||||||| ||| | | ||| ||| Sbjct 6284 AAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGC 6343 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 || | |||||||| |||| ||| ||||| || ||||| || ||||| || | ||| Sbjct 6344 ATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCT 6403 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694 || || || ||||| || || | ||| |||| || | ||| ||||| |||||| Sbjct 6404 TCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAA 6463 Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT---GTTTC-AATTGCTTTTAA 23750 | | || ||| | ||||| ||||| || ||| | ||| | || || || || Sbjct 6464 TCTAATGCCCACTGAGCCT----TTTTAGCAACACAAGTTAAGTTGCTTATGGCGTTGAA 6519 Query 23751 GAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTC 23810 |||||| |||||| | ||| | || ||||||||||||| |||| |||||||| Sbjct 6520 GAGAAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTC 6579 Query 23811 AGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG 23870 ||| |||||||| || ||||| ||||| | ||||| ||||| | | | || | | || Sbjct 6580 AGAGTGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTG 6639 Query 23871 AACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAA 23930 || || | | || | || | || ||| ||||| || ||||| || ||||| Sbjct 6640 GACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAA 6699 Query 23931 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATT 23990 ||| || | || || ||| ||||| | ||| || | ||| | ||||| | Sbjct 6700 GAAGGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTAT 6759 Query 23991 AATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 | |||||| |||||||| || || || || ||||||||| Sbjct 6760 GAGATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAA 6799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521213769016600